getmeth: Create a methDataSet
In xuz1/ENmix: Quality control and analysis tools for Illumina DNA methylation BeadChip
getmeth R Documentation
Create a methDataSet
Description
To create a methDataSet based on a rgDataset
Usage
getmeth(rgSet)
Arguments
rgSet
An object of class rgDataSet
Details
CpG annotation information is incorporated in the output methDataSet
object, and can be extracted using command rowData().
Value
An object of class methDataSet
Author(s)
Zongli Xu
Examples
require(minfiData)
path <- file.path(find.package("minfiData"),"extdata")
#based on rgDataset
rgSet <- readidat(path = path,recursive = TRUE)
meth=getmeth(rgSet)
meth
cginfo=rowData(meth)
xuz1/ENmix documentation built on Aug. 5, 2023, 7:11 a.m.
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| getmeth | R Documentation |
Create a methDataSet
Description
To create a methDataSet based on a rgDataset
Usage
getmeth(rgSet)
Arguments
rgSet |
An object of class |
Details
CpG annotation information is incorporated in the output methDataSet
object, and can be extracted using command rowData().
Value
An object of class methDataSet
Author(s)
Zongli Xu
Examples
require(minfiData)
path <- file.path(find.package("minfiData"),"extdata")
#based on rgDataset
rgSet <- readidat(path = path,recursive = TRUE)
meth=getmeth(rgSet)
meth
cginfo=rowData(meth)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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