Man pages for xuz1/ENmix
Data preprocessing and quality control for Illumina HumanMethylation450 and MethylationEPIC BeadChip

B2MConvert Beta value to M value.
bmiq.mcA multi-processor wrapper of BMIQ method
ComBat.mcA multi-processor wrapper for ComBat method.
ctrlsvaNon-negative control surrogate variables
freqpolyFrequency polygon plot
getBetaExtract Beta value.
M2BConvert M value to Beta value.
mpreprocessA pipeline to perform background correction, dye bias...
multifreqpolyFrequency polygon plot to display data distribution.
nmode.mcEstimating number of mode in methylaion data for each probe.
normalize.quantile.450kQuantile normalization.
norm.quantileQuantile normalization.
pcrplotPrincipal component regression plot
plotCtrlPlot internal controls of 450K or MethylationEPIC BeadChip.
preprocessENmixThe ENmix background correction for HumanMethylation 450 and...
QCfilterSample or CpG probe filter.
QCinfoQC information.
rcpRegression on Correlated Probes(RCP)
relicRELIC dye bias correction method for Illumina...
rm.outlierFiltering out outlier and/or low quality values
xuz1/ENmix documentation built on March 9, 2019, 3:20 a.m.