Data preprocessing and quality control for Illumina HumanMethylation450 and MethylationEPIC BeadChip

B2M | Convert Beta value to M value. |

bmiq.mc | A multi-processor wrapper of BMIQ method |

ComBat.mc | A multi-processor wrapper for ComBat method. |

ctrlsva | Non-negative control surrogate variables |

freqpoly | Frequency polygon plot |

getBeta | Extract Beta value. |

M2B | Convert M value to Beta value. |

mpreprocess | A pipeline to perform background correction, dye bias... |

multifreqpoly | Frequency polygon plot to display data distribution. |

nmode.mc | Estimating number of mode in methylaion data for each probe. |

normalize.quantile.450k | Quantile normalization. |

norm.quantile | Quantile normalization. |

oxBS.MLE | oxBS-MLE. |

pcrplot | Principal component regression plot |

plotCtrl | Plot internal controls of 450K or MethylationEPIC BeadChip. |

preprocessENmix | The ENmix background correction for HumanMethylation 450 and... |

QCfilter | Sample or CpG probe filter. |

QCinfo | QC information. |

rcp | Regression on Correlated Probes(RCP) |

relic | RELIC dye bias correction method for Illumina... |

rm.outlier | Filtering out outlier and/or low quality values |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.