getCGinfo: CpG probe annotation inforamtion
In xuz1/ENmix: Quality control and analysis tools for Illumina DNA methylation BeadChip
getCGinfo R Documentation
CpG probe annotation inforamtion
Description
Extract CpG probe annotation inforamtion from an rgDataSet
Usage
getCGinfo(rgSet, type="IandII")
Arguments
rgSet
An object of class rgDataSet
type
One of the following options "I","II","IandII","ctrl",
indicating type I, type II type I & II or control probes type
Value
An object of data frame class
Author(s)
Zongli Xu
Examples
require(minfiData)
path <- file.path(find.package("minfiData"),"extdata")
#based on rgDataset
rgSet <- readidat(path = path,recursive = TRUE)
cginfo=getCGinfo(rgSet,type="IandII")
xuz1/ENmix documentation built on Nov. 24, 2024, 4:31 a.m.
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| getCGinfo | R Documentation |
CpG probe annotation inforamtion
Description
Extract CpG probe annotation inforamtion from an rgDataSet
Usage
getCGinfo(rgSet, type="IandII")
Arguments
rgSet |
An object of class |
type |
One of the following options "I","II","IandII","ctrl", indicating type I, type II type I & II or control probes type |
Value
An object of data frame class
Author(s)
Zongli Xu
Examples
require(minfiData)
path <- file.path(find.package("minfiData"),"extdata")
#based on rgDataset
rgSet <- readidat(path = path,recursive = TRUE)
cginfo=getCGinfo(rgSet,type="IandII")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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