Man pages for xuz1/ENmix
Quality control and analysis tools for Illumina DNA methylation BeadChip
| B2M | Converting methylation beta value to M value. |
| calcdetP | To calculate detection P values |
| combp | Identification of differentially methylated regions |
| ctrlsva | Non-negative internal control surrogate variables |
| dupicc | Evaluation of measurement reliability using duplicate samples |
| estimateCellProp | Cell type proportion estimator |
| freqpoly | Frequency polygon plot |
| getB | Extract methylation Beta values. |
| getCGinfo | CpG probe annotation inforamtion |
| getmeth | Create a methDataSet |
| ipdmr | Differentially methylated regions |
| M2B | Converting methylation M value to beta value. |
| methDataSet-class | Class '"methDataSet"' |
| methscore | DNA Methylation predictors |
| methyAge | Methylation Age estimator |
| mhtplot | P value manhattan plot |
| mpreprocess | methylation data QC and preprocessing pipeline for Illuminal... |
| multifreqpoly | Multiple frequency polygon plot |
| nmode | Estimating number of mode for each row of data |
| norm.quantile | Quantile normalization. |
| oxBS.MLE | oxBS-MLE. |
| pcrplot | Principal component regression plot |
| plotCtrl | Internal control plot |
| p.qqplot | P value Q-Q plot |
| predSex | Estimating sample sex |
| preprocessENmix | The ENmix background correction |
| qcfilter | Filtering out low quality and outlier data |
| QCinfo | Extract QC information |
| rcp | Illumina methylation array probe type bias correction |
| rcp2 | Modified RCP method |
| readidat | Parsing IDAT files for Illumina methylation arrays . |
| readmanifest | Parsing Illumina methylation arrays manifest file. |
| relic | REgression on Logarithm of Internal Control probes (RELIC) |
| repicc | Calculating intraclass correlation coefficient using... |
| rgDataSet-class | Class '"rgDataSet"' |
| rm.cgsuffix | Remove suffix from CpG names and combine duplicated CpGs |
| simubed | Simulation of bed format example file. |
