iDEA is a new method for analyzing single-cell RNAseq data. It integrates differential expression (DE) analysis and gene set enrichment analysis (GSEA) into a joint statistical framework, providing substantial power gains for both analytic tasks. iDEA requires gene-level summary statistics in terms of fold change/effect size estimates and their standard errors as input, which can be obtained using any existing single-cell RNAseq DE methods.
Package details |
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Author | Shiquan Sun, Ying Ma |
Maintainer | Shiquan Sun <shiquans@umich.edu>, Ying Ma <yingma@umich.edu> |
License | GPL-3 |
Version | 1.0.1 |
Package repository | View on GitHub |
Installation |
Install the latest version of this package by entering the following in R:
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