xzhoulab/iDEA: Integrative Differential Expression and Gene Set Enrichment Analysis
iDEA is a new method for analyzing single-cell RNAseq data. It integrates differential expression (DE) analysis and gene set enrichment analysis (GSEA) into a joint statistical framework, providing substantial power gains for both analytic tasks. iDEA requires gene-level summary statistics in terms of fold change/effect size estimates and their standard errors as input, which can be obtained using any existing single-cell RNAseq DE methods.
Getting started
Browse package contents
Package details |
|
|---|---|
| Author | Shiquan Sun, Ying Ma |
| Maintainer | Shiquan Sun <shiquans@umich.edu>, Ying Ma <yingma@umich.edu> |
| License | GPL-3 |
| Version | 1.0.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
