ComputeWeight: Compute the weight for each gene to construct gene-gene...

In xzhoulab/iDEA: Integrative Differential Expression and Gene Set Enrichment Analysis

Compute the weight for each gene to construct gene-gene correlation

Description

Compute the weight for each gene to construct gene-gene correlation

Usage

ComputeWeight(
  counts,
  normalization = TRUE,
  lib_size = NULL,
  method = "pearson"
)

Arguments

counts	Raw count data, each column is a cell and each row is a gene.
normalization	Bool variable to denote whether to do normalization before computing the weight, The default is TRUE.
lib_size	Read deepth for each cell, For default, summarize all read counts across whole genes.
method	The method to compute correlation matrix, pearson (default).

Value

Return the weight for each gene, p x 1 vector

xzhoulab/iDEA documentation built on Oct. 8, 2022, 8:54 a.m.