Man pages for xzhoulab/iDEA
Integrative Differential Expression and Gene Set Enrichment Analysis
| ComputeWeight | Compute the weight for each gene to construct gene-gene... |
| CreateiDEAObject | Setup the iDEA object, |
| EMMCMCStepSummary | EM-MCMC function based on summary statistics, zscores |
| EMMCMCStepSummaryVariant | EM-MCMC function based on summary statistics, effect size |
| EMMCMCStepSummaryWeight | EM-MCMC with weight function based on summary statistics,... |
| iDEA.BMA | Bayesian model averaging (BMA) approach to aggregate DE... |
| iDEA.FDR | We constructed a permuted null distribution by permuting gene... |
| iDEA.fit | Integrative DE and GSEA based summary statistics |
| iDEA.fit.null | We constructed a permuted null distribution by permuting gene... |
| iDEA.louis | Correct the p-values using Louis method |
| iDEA-package | Integrative Differential Expression and Gene Set Enrichment... |
| iDEAWeight.fit | Integrative DE and GSEA based summary statistics and weight... |
| QQNorm | Quantile-Quantile normalization for count data |
