Files in ypriverol/pIR
pIR: Estimating Isoelectric Point (pI) of Peptide and Proteins from Amino Acid Sequence.
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/correlation.R
R/dataProcessing.R
R/pIBenchmark.R
R/pIBjell.R
R/pICofactor.R
R/pIIterative.R
R/pISVM.R
R/pkSets.R
R/plotCorrelation.R
R/plotOutliers.R
R/plotPTMCorrelation.R
R/plotPTMShift.R
README.md
data/gauci_dataset_acetylated.txt
data/gauci_dataset_non_acetylated.txt
data/hellerDataSet.rda
data/pIIterativePK.rda
data/peptideRadialModel.RData
data/peptides.rda
data/proteins.rda
data/ruiBrancaDataSet.csv
data/svmProteinData.rda
docs/example_training_svm_model.R
docs/modified_sequence_analysis.docx
docs/modified_sequence_analysis.pdf
inst/extdata/dataPeptidePIs.csv
inst/extdata/dataProteinPIs.csv
inst/extdata/excluding_acetylation_dataset.txt
inst/extdata/excluding_phosphorylation_dataset.txt
inst/extdata/including_acetylation_dataset.txt
inst/extdata/including_phosphorylation_dataset.txt
inst/extdata/pipdb-unique-proteins-runs-filtered-final.txt
inst/extdata/svmBrancaDataSet.rda
inst/extdata/svmDataDefault.csv
inst/extdata/svmDataSetDefault.rda
inst/extdata/svmDataShort.csv
inst/extdata/svmHellerDataSet.rda
inst/extdata/svmModelBranca.rda
inst/extdata/svmModelDefault.rda
inst/extdata/svmModelHeller.rda
inst/extdata/svmPeptideData.csv
inst/extdata/svmProteinData.csv
man/aaIndex.Rd
man/bindRMSECorrelation.Rd
man/bindRMSECorrelationFrame.Rd
man/chargeAtPH.Rd
man/computeAllBjellValues.Rd
man/computeAllIterativeValues.Rd
man/computeCorrelationExperimental.Rd
man/computeCorrelationMatrix.Rd
man/computePIvalues.Rd
man/computeRMSEExperimental.Rd
man/defaultPeptideTrainData.Rd
man/getCoeff.Rd
man/getcharge.Rd
man/loadCTermPK.Rd
man/loadGroupPK.Rd
man/loadNTermPK.Rd
man/loadPkSetIterative.Rd
man/loadSVMModel.Rd
man/multiplot.Rd
man/pIBjell.Rd
man/pIBjellMultipleSequences.Rd
man/pICofactor.Rd
man/pIIterative.Rd
man/pIIterativeMultipleSequences.Rd
man/pIIterativePK.Rd
man/pISVMpeptide.Rd
man/pISVMsequences.Rd
man/parseCoeff.Rd
man/parseOutliersValue.Rd
man/pcharge.Rd
man/pchargePhosphorylation.Rd
man/peptides.Rd
man/plotBoxPlotCorrelation.Rd
man/plotCorrelationMatrix.Rd
man/plotFractionCorrelation.Rd
man/plotHistFrecuencyValues.Rd
man/plotHistFunc.Rd
man/plotOutlierDistribution.Rd
man/plotOutlierOverall.Rd
man/plotOutliers.Rd
man/plotPTMCorrelation.Rd
man/plotPTMShiftOnFractions.Rd
man/plotPTMShiftOverallData.Rd
man/plotRawCorrelation.Rd
man/processData.Rd
man/processTerminalSequence.Rd
man/proteins.Rd
man/rawCorrelation.Rd
man/reformat.Rd
man/removeFirstColumn.Rd
man/removePTM.Rd
man/retrievePKValue.Rd
man/rmse.Rd
man/specify_decimal.Rd
man/svmPIBuildData.Rd
man/svmPIData.Rd
man/transformData.Rd
pIR.Rproj
tests/testthat.R
tests/testthat/testpIBjell.R
tests/testthat/testpIIterative.R
tests/testthat/testpISVM.R
vignettes/Bioc.bib
vignettes/pIR-concordance.tex
vignettes/pIR-figureexample.pdf
vignettes/pIR.Rnw
vignettes/pIR.aux
vignettes/pIR.bbl
vignettes/pIR.blg
vignettes/pIR.log
vignettes/pIR.out
vignettes/pIR.pdf
vignettes/pIR.tex
vignettes/pIR.toc
