Man pages for ypriverol/pIR
pIR: Estimating Isoelectric Point (pI) of Peptide and Proteins from Amino Acid Sequence.
| aaIndex | aaIndex |
| bindRMSECorrelation | bindRMSECorrelation |
| bindRMSECorrelationFrame | bindRMSECorrelationFrame |
| chargeAtPH | chargeAtPH |
| computeAllBjellValues | computeAllBjellValues |
| computeAllIterativeValues | computeAllIterativeValues |
| computeCorrelationExperimental | getCorrelationExperimental |
| computeCorrelationMatrix | computeCorrelationMatrix |
| computePIvalues | computePIvalues |
| computeRMSEExperimental | computeRMSEExperimental |
| defaultPeptideTrainData | defaultPeptideTrainData This function acces to the data to... |
| getcharge | getcharge |
| getCoeff | getCoeff |
| loadCTermPK | loadCTermPK |
| loadGroupPK | setGroupPK |
| loadNTermPK | loadNTermPK |
| loadPkSetIterative | loadPkSetIterative |
| loadSVMModel | loadSVMModel |
| multiplot | multiplot |
| parseCoeff | parseCoeff |
| parseOutliersValue | parseOutliersValue |
| pcharge | pcharge |
| pchargePhosphorylation | pchargePhosphorylation |
| peptides | Isoelectric poit of a set of peptides from a published paper |
| pIBjell | pIBjell |
| pIBjellMultipleSequences | pIBjellMultipleSequences |
| pICofactor | pICofactor |
| pIIterative | pIIterative |
| pIIterativeMultipleSequences | pIIterativeMultipleSequences |
| pIIterativePK | pIIterativePK |
| pISVMpeptide | pISVMpeptide |
| pISVMsequences | pISVMsequences |
| plotBoxPlotCorrelation | plotBoxPlotCorrelation |
| plotCorrelationMatrix | plotCorrelationMatrix |
| plotFractionCorrelation | plotFractionCorrelation |
| plotHistFrecuencyValues | plotRawCorrelation |
| plotHistFunc | plotHistFunc |
| plotOutlierDistribution | plotOutlierDistribution |
| plotOutlierOverall | plotOutlierOverall |
| plotOutliers | plotOutliers |
| plotPTMCorrelation | plotPTMCorrelation |
| plotPTMShiftOnFractions | plotPTMShiftOnFractions |
| plotPTMShiftOverallData | plotPTMShiftOverallData |
| plotRawCorrelation | plotRawCorrelation |
| processData | processData |
| processTerminalSequence | processTerminalSequence |
| proteins | Isoelectric poit of a set of proteins from PID-DB |
| rawCorrelation | plotCorrelation |
| reformat | reformat |
| removeFirstColumn | removeFirstColumn |
| removePTM | removePTM |
| retrievePKValue | retrievePKValue |
| rmse | rmse |
| specify_decimal | specify_decimal |
| svmPIBuildData | svmPIBuildSVMData |
| svmPIData | svmPIData |
| transformData | transformData |
