readme.md

In yufree/xsetplus: process and annotate data with xcms in a simple way

Use the following code to install dependance for this package

install.packages('devtools')
install.packages("WGCNA")
source("https://bioconductor.org/biocLite.R")
biocLite()
biocLite("Rdisop",suppressUpdates=TRUE)
biocLite("KEGGREST",suppressUpdates=TRUE)
biocLite("pcaMethods")
biocLite('GO.db')
biocLite('impute')
biocLite('preprocessCore')
biocLite('bitops')
biocLite('xcms')
biocLite('RBGL')
biocLite('igraph')
biocLite('annotate')
devtools::install_github("omegahat/XMLSchema")
devtools::install_github("bdemeshev/SSOAP")
devtools::install_github('yufree/MAIT')
devtools::install_github('yufree/xMSannotator')
devtools::install_github('yufree/sva-devel')
devtools::install_github('yufree/xsetplus')
library('xsetplus')

data(adduct_table) data(hmdbAllinf) data(hmdbCompMZ) data(keggCompMZ) data(lipidmapsCompMZ) data(t3dbCompMZ) data(adduct_weights) num_nodes = 10

yufree/xsetplus documentation built on Nov. 11, 2019, 4:22 p.m.