pred_matrix-methods: Retrieve the prediction matrix from a SIAMCAT object

In zellerlab/siamcat: Statistical Inference of Associations between Microbial Communities And host phenoTypes

Retrieve the prediction matrix from a SIAMCAT object

Description

Function to retrieve the prediction matrix from a SIAMCAT object

Usage

pred_matrix(siamcat, verbose=1)

## S4 method for signature 'siamcat'
pred_matrix(siamcat, verbose = 1)

Arguments

siamcat	(Required). A siamcat-class object that contains a prediction matrix
verbose	integer, if the slot is empty, should a message be printed? values can be either 0 (no output) or 1 (print message)

Details

The functions returns a matrix containing the predictions for all samples across the different cross-validation repeats. See make.predictions for more information.

Value

A matrix containing predictions or NULL

Examples

data(siamcat_example)
temp <- pred_matrix(siamcat_example)
head(temp)

zellerlab/siamcat documentation built on Feb. 1, 2024, 2:21 a.m.