siamcat.to.lefse: create a LEfSe input file from SIAMCAT object

In zellerlab/siamcat: Statistical Inference of Associations between Microbial Communities And host phenoTypes

create a LEfSe input file from SIAMCAT object

Description

This function creates a LEfSe input file from SIAMCAT object

Usage

siamcat.to.lefse(siamcat, filename = "siamcat_output.txt")

Arguments

siamcat	object of class siamcat-class
filename	name of the input file to which data will be save

Value

nothing but data is written to a file

Examples

data(siamcat_example)
siamcat.to.lefse(siamcat_example)

zellerlab/siamcat documentation built on Feb. 1, 2024, 2:21 a.m.