Description Usage Arguments Value Examples

Create a PLN object, a list containing a read count matrix ‘count’ and sample description matrix ‘sample’.

1 | ```
PLNobject(count,conditionNumber)
``` |

`count` |
This is a matrix containing the read counts of R*I samples at J genes (R is the number of conditions in each matched sample set and I is the number of sample sets). Here columns 1 through I are for I independent samples from condition 1, columns I+1 through 2I are for I samples from condition 2 matched by samples 1 through I, ... , columns (R-1)*I+1 through R*I are for I samples from condition R matched by samples 1 through I. |

`conditionNumber` |
Number of conditions. |

`d$count` |
Origninal read count matrix |

`d$conditionNumber` |
The number of conditions |

`d$sample` |
A matrix of sample information: ‘SampleName’, ‘TotalCount’, ‘MedianCount’ |

1 2 3 |

zhanghfd/PLNseq documentation built on May 4, 2019, 10:16 p.m.

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