genewiseSigma: Genewise sigma
In zhanghfd/PLNseq: PLNseq: A multivariate Poisson lognormal distribution for high-throughput correlated RNA-sequencing read count data
Description
Usage
Arguments
Value
Examples
Description
Estimate genewise ‘sigma’ (standard deviation parameter of lognormal distribution).
Usage
1
genewiseSigma(d,w=25)
Arguments
d
This is a PLNseq object.
w
Shrinkage parameter.
Value
d$genewiseSigma
Genewise ‘sigma’
Examples
1
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data(lung);
count = lung[,c(2:4,8:10)];
d = PLNobject(count,2);
d = sizeFactor(d,maxCount=2e3);
d = genewiseSigma(d);
zhanghfd/PLNseq documentation built on May 4, 2019, 10:16 p.m.
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Description Usage Arguments Value Examples
Description
Estimate genewise ‘sigma’ (standard deviation parameter of lognormal distribution).
Usage
1 | genewiseSigma(d,w=25)
|
Arguments
d |
This is a PLNseq object. |
w |
Shrinkage parameter. |
Value
d$genewiseSigma |
Genewise ‘sigma’ |
Examples
1 2 3 4 5 6 | data(lung);
count = lung[,c(2:4,8:10)];
d = PLNobject(count,2);
d = sizeFactor(d,maxCount=2e3);
d = genewiseSigma(d);
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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