commonSigma: Common sigma

Description Usage Arguments Value Examples

Description

Estimate ‘mu’ (mean parameter lognormal distribution) for each gene and condition and a common ‘sigma’ (standard deviation parameter of lognormal distribution).

Usage

1

Arguments

d

This is a PLNseq object.

Value

d$commonSigma

A common ‘sigma’

Examples

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    data(lung);
    count = lung[,c(2:4,8:10)];
    d = PLNobject(count,2);
    d = sizeFactor(d,maxCount=2e3);
    d = commonSigma(d);

zhanghfd/PLNseq documentation built on May 4, 2019, 10:16 p.m.