Files in zhengfj1994/MeTEA
Targeted extraction from untargeted metabolomics dataset by using metabolomics database
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
MetEx.Rproj
NAMESPACE
R/KEGGdownloader.R
R/MetExAnnotation.R
R/annotationFromPeakTable.R
R/annotationFromPeakTable.parallel.R
R/batchMS2Score.QQQ.R
R/batchMS2Score.R
R/batchMS2Score.parallel.R
R/dbImporter.R
R/deconvolve_fff.R
R/emg.R
R/entropyCalculator.R
R/exactMsp.R
R/extracResFilter.R
R/fitCurve.R
R/fitCurve_emgGaussian.R
R/fitCurve_skewedGaussian.R
R/identifiedResFilter.R
R/importMgf.R
R/intEntropyCalculator.R
R/is.peakPantheR_curveFit.R
R/jsonReader.R
R/list2dataframe.R
R/mergems2.R
R/ms1ms2Match.R
R/ms2Score.R
R/ms2Score.old.R
R/peakDectAndEntroCal.R
R/peakDetection.R
R/peakGroup.R
R/predictCurve.R
R/readMsp.R
R/retentionTimeCalibration.R
R/targetExtraction.R
R/targetExtraction.parallel.R
R/xmlReader.R
README.md
inst/extdata/MetExResult/MetExRes.csv
inst/extdata/database/MSMS-Pos-MassBank.msp
inst/extdata/database/MoNA-export-MetaboBASE.msp
inst/extdata/database/example_database.xlsx
inst/extdata/json/example.json
inst/extdata/mgf/example-2.mgf
inst/extdata/mgf/example.mgf
inst/extdata/mzXML/example-2.mzXML
inst/extdata/mzXML/example.mzXML
inst/extdata/peakTable/example.csv
inst/extdata/shinyApp/global.R
inst/extdata/shinyApp/main/AnnotationFromPeakTable.server.R
inst/extdata/shinyApp/main/AnnotationFromPeakTable.ui.R
inst/extdata/shinyApp/main/Help.ui.R
inst/extdata/shinyApp/main/MetEx.mutiple.server.R
inst/extdata/shinyApp/main/MetEx.mutiple.ui.R
inst/extdata/shinyApp/main/MetEx.single.server.R
inst/extdata/shinyApp/main/MetEx.single.ui.R
inst/extdata/shinyApp/main/OtherSoftwareTools.ui.R
inst/extdata/shinyApp/main/Updata.ui.R
inst/extdata/shinyApp/main/introduction.ui.R
inst/extdata/shinyApp/main/mspReader.ui.R
inst/extdata/shinyApp/server.R
inst/extdata/shinyApp/ui.R
inst/extdata/shinyApp/www/Finished.png
inst/extdata/shinyApp/www/MetEx_icon.png
inst/extdata/shinyApp/www/MetEx_icon_2.png
inst/extdata/shinyApp/www/The_workflow_of_MetEx.png
inst/extdata/shinyApp/www/flower_left.png
inst/extdata/shinyApp/www/flower_right.png
inst/extdata/testData/MS2MatrixTest.rda
inst/extdata/testData/MetExAnnotationResList.Rda
inst/extdata/testData/batchMS2ScoreResult.Rda
inst/extdata/testData/dataPeakSheakTest.rda
inst/extdata/testData/dbDataTest.rda
inst/extdata/testData/eicDataTest.rda
inst/extdata/testData/mgfDataTest.rda
inst/extdata/testData/mgfMatrixTest.rda
inst/extdata/testData/ms1InfoQQQTest.rda
inst/extdata/testData/ms1InfoTest.rda
inst/extdata/testData/ms2ActTest.rda
inst/extdata/testData/ms2DBTest.rda
inst/extdata/testData/ms2ListTest.rda
inst/extdata/testData/mspDataTest.rda
inst/extdata/testData/targExtracResTest.rda
inst/extdata/trCalibration/IS-for-tR-calibration.xlsx
inst/extdata/xml/example.xml
man/KEGGdownloader.Rd
man/MetExAnnotation.Rd
man/annotationFromPeakTable.Rd
man/annotationFromPeakTable.parallel.Rd
man/batchMS2Score.QQQ.Rd
man/batchMS2Score.Rd
man/batchMS2Score.parallel.Rd
man/dbImporter.Rd
man/deconvolve_fff.Rd
man/emgGaussian_guess.Rd
man/emgGaussian_minpack.lm.Rd
man/emgGaussian_minpack.lm_objectiveFun.Rd
man/entropyCalculator.Rd
man/exactMsp.Rd
man/extracResFilter.Rd
man/fitCurve.Rd
man/gaussian_cerf.Rd
man/gaussian_erf.Rd
man/identifiedResFilter.Rd
man/importMgf.Rd
man/intEntropyCalculator.Rd
man/is.peakPantheR_curveFit.Rd
man/jsonReader.Rd
man/list2dataframe.Rd
man/mergems2.Rd
man/ms1ms2Match.Rd
man/ms2Score.Rd
man/ms2Score.old.Rd
man/peakDectAndEntroCal.Rd
man/peakDetection.Rd
man/peakGroup.Rd
man/predictCurve.Rd
man/readMsp.Rd
man/retentionTimeCalibration.Rd
man/skewedGaussian_guess.Rd
man/skewedGaussian_minpack.lm.Rd
man/skewedGaussian_minpack.lm_objectiveFun.Rd
man/targetExtraction.Rd
man/targetExtraction.parallel.Rd
man/xmlReader.Rd
screenshots/IS-for-tR-calibration.png
screenshots/Offline-install-1.png
screenshots/Offline-install-2.png
screenshots/Offline-install-3.png
screenshots/Screen-shot-of-Shiny-App.png
screenshots/Workflow-of-MetEx.png
screenshots/example-of-database.png
