seqCheck: Data Integrity Checking

In zhengxwen/SeqArray: Data Management of Large-Scale Whole-Genome Sequence Variant Calls

Data Integrity Checking

Description

Performs data integrity on a SeqArray GDS file.

Usage

seqCheck(gdsfile, verbose=TRUE)

Arguments

gdsfile	a SeqVarGDSClass object, or a file name
verbose	if TRUE, display information

Value

A list of the following components:

hash	a data.frame for hash checking, including algo for digest algorithms and ok for the checking states
dimension	a data.frame for checking the dimension of each variable, including ok for the checking states and info for the error messages

Author(s)

Xiuwen Zheng

Examples

# the GDS file
(gds.fn <- seqExampleFileName("gds"))

seqCheck(gds.fn)

zhengxwen/SeqArray documentation built on Dec. 14, 2024, 8:36 p.m.