seqVCF_SampID: Get the Sample IDs
In zhengxwen/SeqArray: Data Management of Large-Scale Whole-Genome Sequence Variant Calls
seqVCF_SampID R Documentation
Get the Sample IDs
Description
Returns the sample IDs of a VCF file.
Usage
seqVCF_SampID(vcf.fn)
Arguments
vcf.fn
the file name, output a file of VCF format; or a
connection object
Author(s)
Xiuwen Zheng
References
Danecek, P., Auton, A., Abecasis, G., Albers, C.A., Banks, E., DePristo,
M.A., Handsaker, R.E., Lunter, G., Marth, G.T., Sherry, S.T., et al. (2011).
The variant call format and VCFtools. Bioinformatics 27, 2156-2158.
See Also
seqVCF_Header, seqVCF2GDS
Examples
# the VCF file
(vcf.fn <- seqExampleFileName("vcf"))
# get sample id
seqVCF_SampID(vcf.fn)
zhengxwen/SeqArray documentation built on Dec. 14, 2024, 8:36 p.m.
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| seqVCF_SampID | R Documentation |
Get the Sample IDs
Description
Returns the sample IDs of a VCF file.
Usage
seqVCF_SampID(vcf.fn)
Arguments
vcf.fn |
the file name, output a file of VCF format; or a
|
Author(s)
Xiuwen Zheng
References
Danecek, P., Auton, A., Abecasis, G., Albers, C.A., Banks, E., DePristo, M.A., Handsaker, R.E., Lunter, G., Marth, G.T., Sherry, S.T., et al. (2011). The variant call format and VCFtools. Bioinformatics 27, 2156-2158.
See Also
seqVCF_Header, seqVCF2GDS
Examples
# the VCF file
(vcf.fn <- seqExampleFileName("vcf"))
# get sample id
seqVCF_SampID(vcf.fn)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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