Man pages for zhiyuanhu/masonmd
Make Sense of Nonsense-Mediated Decay
| classify.nmd | Classify NMD-elicit mutations |
| findORF | Find ORF |
| findStartPos | Find start position |
| findStopPos | Find stop position |
| get.longest.cds | Get information of longest isoform for given gene |
| get_mut_exjun | Get relative positions of exon-exon junctions in mutated gene |
| get_mut_seq_exjun | Get mutated coding sequence and junctions |
| get_tx_seq | Get coding sequence of a transcript |
| last.exexjun.pos | Get position of last exon-exon junction |
| mut.info | Get the information of mutated sequence |
