Description Usage Arguments Details Value Examples
sum
returns the sum of all the values present in its arguments.
1 | get.longest.cds(gene_id, ref)
|
gene_id |
numeric; Entrez gene ID |
numeric; |
reference genome/NCBI build; |
Get the longest cds if the gene ID is given
A list containing four entries:
gene
gene Entrez ID; same with the input
txid
transcript ID of the longest isoform
seq
charactor; coding sequence of the transcript
tx
infomation of the transcript in form of Txdb
1 2 | library(masonmd)
get.longest.cds(gene_id = 13, ref = 37)
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