Description Usage Arguments Details Value
get_mut_exjun
refers relative positions of exon-exon junctions in mutated gene.
1 | get_mut_exjun(wt_exjun, mut_start, mut_end, mut_nt)
|
wt_exjun |
a string that consists of 0 or 1 to indicates the positions of exon-exon junctions in the coding sequence; |
mut_start |
position of mutation start in chromosome |
mut_end |
position of mutation end in chromosome |
mut_nt |
nucleotides after alteration |
Indicate the positions of exon-exon junctions in the mutated sequence based on the mutation information and the positions of exon-exon junctions in wildtype sequence.
A list containing two entries:
mut_exjun
charactor that consists of 0 and 1; 1 represents the position of junctions
note
extra note
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