Description Usage Arguments Details Value Examples
mut.info
returns the sequences and positional infomation of a mutated gene.
1 | mut.info(gene_id, ref, mut_start, mut_end, ref_nt, mut_nt)
|
gene_id |
numeric; gene Entrez ID |
ref |
numeric; reference genome/NCBI build; |
mut_start |
numeric; the absolution start position of the mutations on chromosome on + strand |
mut_end |
numeric; the absolution end position of the mutations on chromosome on + strand |
ref_nt |
charactor; the reference nucleotides of the mutations on + strand;
|
mut_nt |
charactor; the mutation nucleotides on + strand; |
Returns the sequences and positional infomation of a mutated gene.
charactor vector containing five entries:
mut_seq
charactor; coding sequence of the mutated gene.
last.exexjun
numeric; position of last exon-exon junction.
note
extra explanation.
wt_seq
charactor; coding sequence of the wildtype gene.
n.exon
numeric; number of exons in the gene.
1 2 3 4 |
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