classify.nmd | Classify NMD-elicit mutations |
findORF | Find ORF |
findStartPos | Find start position |
findStopPos | Find stop position |
get.longest.cds | Get information of longest isoform for given gene |
get_mut_exjun | Get relative positions of exon-exon junctions in mutated gene |
get_mut_seq_exjun | Get mutated coding sequence and junctions |
get_tx_seq | Get coding sequence of a transcript |
last.exexjun.pos | Get position of last exon-exon junction |
mut.info | Get the information of mutated sequence |
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