Man pages for zhiyuanhu/masonmd
Make Sense of Nonsense-Mediated Decay

classify.nmdClassify NMD-elicit mutations
findORFFind ORF
findStartPosFind start position
findStopPosFind stop position
get.longest.cdsGet information of longest isoform for given gene
get_mut_exjunGet relative positions of exon-exon junctions in mutated gene
get_mut_seq_exjunGet mutated coding sequence and junctions
get_tx_seqGet coding sequence of a transcript
last.exexjun.posGet position of last exon-exon junction
mut.infoGet the information of mutated sequence
zhiyuanhu/masonmd documentation built on May 28, 2017, 1:49 p.m.