geneHeatmap: geneHeatmap

In zhupinglab/Aodav: Advanced omics data analysis and visualization

Description

Heatmap plot for selected genes

Usage

geneHeatmap(obj, genes, label, annotate, minScale = -2.5,
  maxScale = 2.5, cluster_rows = T, cluster_cols = F,
  cutree_rows = NA, cutree_cols = NA,
  clustering_distance_rows = "euclidean",
  clustering_method = "ward.D2", show_rownames = T,
  show_colnames = F, fontsize_row = 5)

Arguments

obj	Seurat object
genes	selected genes.
label	stamp for output file name
annotate	features to display on top of cells
minScale	minimum value to scale the matrix
maxScale	maximum value to scale the matrix
cluster_rows	clustering by rows
cluster_cols	clustering by cols
cutree_rows	cut the rows into specified groups
cutree_cols	cut the cols into specified groups
clustering_distance_rows	method to measure distance
clustering_method	clustering method
show_rownames	show row names
show_colnames	show column names
fontsize_row	size of row names

Examples

## Not run: 
geneHeatmap(obj, genes, label, annotate)

## End(Not run)

zhupinglab/Aodav documentation built on June 10, 2019, 2:31 a.m.