volcanoPlot: volcanoPlot

In zhupinglab/Aodav: Advanced omics data analysis and visualization

Description

volcanoPlot plot for genes between two groups

Usage

volcanoPlot(DEGs, adjP = 0.05, fc = log(2), ymax = 5,
  showSymbols = FALSE, label = suppressWarnings(Sys.Date()),
  width = 7, height = 7)

Arguments

DEGs	differentially expressed gene matrix obtained from 'FindMarkers'.
adjP	cutoff of adjusted p value to define DEGs
fc	fold change to define DEGs
ymax	maximum -log10(adjP) to show on y axis, default: 5.
showSymbols	show gene symbols for DEGs
label	stamp for output file name, default: date.
width	figure width, default: 7
heigth	figure height, default: 5

Examples

## Not run: 
volcanoPlot(DEGs)

## End(Not run)

zhupinglab/Aodav documentation built on June 10, 2019, 2:31 a.m.