generateSeq: generateSeq generate the isoform sequence from the isoform...
In zhushijia/STAR2bSMRT: STARlong and STARshort based Single Molecule Real Time Iso-Seq analysis
Description
Usage
Arguments
Value
Description
generateSeq
generate the isoform sequence from the isoform list
Usage
1
generateSeq(genome, isoform)
Arguments
genome
DNAStringSet indicating the genome reference
isoform
a list of data frame indicating the exon locations in isoforms
Value
a list comprsing the following items
-
rna character value indicating the RNA sequence of isoforms
-
protein character value indicating the amino acid sequence of
isoforms
-
translated boolean value indicating whether the isoform can be
translated
zhushijia/STAR2bSMRT documentation built on Dec. 18, 2019, 7:37 a.m.
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Description Usage Arguments Value
Description
generateSeq generate the isoform sequence from the isoform list
Usage
1 | generateSeq(genome, isoform)
|
Arguments
genome |
DNAStringSet indicating the genome reference |
isoform |
a list of data frame indicating the exon locations in isoforms |
Value
a list comprsing the following items
-
rna character value indicating the RNA sequence of isoforms
-
protein character value indicating the amino acid sequence of isoforms
-
translated boolean value indicating whether the isoform can be translated
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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