kallistoQuant: kallistoQuant perform the kallisto transcript quantification
In zhushijia/STAR2bSMRT: STARlong and STARshort based Single Molecule Real Time Iso-Seq analysis
View source: R/kallistoQuant.R
Description
kallistoQuant
perform the kallisto transcript quantification
Usage
1
kallistoQuant(transcript, SR1, SR2, outputDir)
Arguments
transcript
character value indicating the transcriptome file
SR1
character value indicating the short read file in fastq format:
single-end or paired-end R1
SR2
character value indicating the short read file in fastq format:
paired-end R2
outputDir
character value indicating the direcotry where results are
saved.
zhushijia/STAR2bSMRT documentation built on Dec. 18, 2019, 7:37 a.m.
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View source: R/kallistoQuant.R
Description
kallistoQuant perform the kallisto transcript quantification
Usage
1 | kallistoQuant(transcript, SR1, SR2, outputDir)
|
Arguments
transcript |
character value indicating the transcriptome file |
SR1 |
character value indicating the short read file in fastq format: single-end or paired-end R1 |
SR2 |
character value indicating the short read file in fastq format: paired-end R2 |
outputDir |
character value indicating the direcotry where results are saved. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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