getJuncBySam: getJuncBySam
In zhushijia/STAR2bSMRT: STARlong and STARshort based Single Molecule Real Time Iso-Seq analysis
Description
Usage
Arguments
Value
Description
getJuncBySam gets the unique junction sites and their numbers from the alignment files
Usage
1
getJuncBySam(alignments, outputDir, chrom = NULL, s = 0, e = Inf)
Arguments
alignments
a character value, indicating the alignment file, .sam for .bam
outputDir
a character value, indicating the directory whether to save the results
chrom
a vector of character values, incidating the chromosomes of insterest
s
an integer value indicating the start site
e
an integer value indicating the end site
Value
a list of data frame representing the splicing junction sites for
each chromosome
zhushijia/STAR2bSMRT documentation built on Dec. 18, 2019, 7:37 a.m.
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Description Usage Arguments Value
Description
getJuncBySam gets the unique junction sites and their numbers from the alignment files
Usage
1 | getJuncBySam(alignments, outputDir, chrom = NULL, s = 0, e = Inf)
|
Arguments
alignments |
a character value, indicating the alignment file, .sam for .bam |
outputDir |
a character value, indicating the directory whether to save the results |
chrom |
a vector of character values, incidating the chromosomes of insterest |
s |
an integer value indicating the start site |
e |
an integer value indicating the end site |
Value
a list of data frame representing the splicing junction sites for each chromosome
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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