starShort: starShort run the STARshort mapping
In zhushijia/STAR2bSMRT: STARlong and STARshort based Single Molecule Real Time Iso-Seq analysis
Description
starShort
run the STARshort mapping
Usage
1
Arguments
genomeDir
character value indicating the location of STAR genome indexes
SR1
character value indicating the short read file in fastq format:
single-end or paired-end R1
SR2
character value indicating the short read file in fastq format:
paired-end R2
outputDir
character value indicating the directory of output
SJ
character value for 2pass STAR mapping
zhushijia/STAR2bSMRT documentation built on Dec. 18, 2019, 7:37 a.m.
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Description
starShort run the STARshort mapping
Usage
1 |
Arguments
genomeDir |
character value indicating the location of STAR genome indexes |
SR1 |
character value indicating the short read file in fastq format: single-end or paired-end R1 |
SR2 |
character value indicating the short read file in fastq format: paired-end R2 |
outputDir |
character value indicating the directory of output |
SJ |
character value for 2pass STAR mapping |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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