Files in zoecastillo/microbiomeExplorer
Microbiome Exploration App
.Rbuildignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS
R/aggreg_norm_functions.R
R/aggregation_module.R
R/corr_analysis_module.R
R/corr_input_module.R
R/corr_module.R
R/correlation_functions.R
R/data_input_module.R
R/diff_analysis_module.R
R/diff_input_module.R
R/diff_module.R
R/differential_functions.R
R/feature_analysis_module.R
R/feature_functions.R
R/feature_input_module.R
R/feature_main_module.R
R/feature_module.R
R/functions.R
R/globals.R
R/inter_analysis_module.R
R/inter_functions.R
R/inter_input_module.R
R/inter_module.R
R/intra_analysis_module.R
R/intra_functions.R
R/intra_input_module.R
R/intra_module.R
R/long_analysis_module.R
R/long_input_module.R
R/long_module.R
R/longitudinal_functions.R
R/phenotype_module.R
R/qc_functions.R
R/reportRow_module.R
R/report_module.R
README.md
inst/extdata/add_pheno.tsv
inst/extdata/md_counts.tsv
inst/extdata/md_feats.tsv
inst/extdata/md_pheno.tsv
inst/shiny/Tutorial.Rmd
inst/shiny/Tutorial.md
inst/shiny/global.R
inst/shiny/server.R
inst/shiny/ui.R
inst/shiny/www/JS/changeTable.js
inst/shiny/www/JS/enableTabs.js
inst/shiny/www/JS/getInputs.js
inst/shiny/www/JS/handleModebar.js
inst/shiny/www/JS/parsePhenoFilters.js
inst/shiny/www/JS/traceName.js
inst/shiny/www/alphadiv.png
inst/shiny/www/betadiv.png
inst/shiny/www/blank.png
inst/shiny/www/correlation.png
inst/shiny/www/difftest.png
inst/shiny/www/dishart.png
inst/shiny/www/featplot.png
inst/shiny/www/heatmap.png
inst/shiny/www/img/analysis_aggregation.jpg
inst/shiny/www/img/analysis_correlation.jpg
inst/shiny/www/img/analysis_diff_details.jpg
inst/shiny/www/img/analysis_differential.jpg
inst/shiny/www/img/analysis_features.jpg
inst/shiny/www/img/analysis_inter_beta.jpg
inst/shiny/www/img/analysis_inter_ellipses.jpg
inst/shiny/www/img/analysis_inter_heatmap.jpg
inst/shiny/www/img/analysis_intra_alpha.jpg
inst/shiny/www/img/analysis_intra_faceted.jpg
inst/shiny/www/img/analysis_intra_features.jpg
inst/shiny/www/img/analysis_longitudinal.jpg
inst/shiny/www/img/data_input_features.jpg
inst/shiny/www/img/data_input_filter.jpg
inst/shiny/www/img/data_input_overview.jpg
inst/shiny/www/img/data_input_phenotype.jpg
inst/shiny/www/img/data_input_samplebars.jpg
inst/shiny/www/img/report_output.jpg
inst/shiny/www/img/reports.jpg
inst/shiny/www/intrafeature.png
inst/shiny/www/longitudinal.png
inst/shiny/www/me.css
inst/shiny/www/qcpic.png
inst/shiny/www/relAb.png
man/abundanceHeatmap.Rd
man/abundanceHeatmapUI.Rd
man/addFeatData.Rd
man/addPhenoData.Rd
man/add_plotly_config.Rd
man/add_plotly_layout.Rd
man/aggFeatures.Rd
man/aggregationTab.Rd
man/aggregationTabUI.Rd
man/alphaDiversity.Rd
man/alphaDiversityUI.Rd
man/avgAbundance.Rd
man/avgAbundanceUI.Rd
man/betaDiversity.Rd
man/betaDiversityUI.Rd
man/betaInput.Rd
man/betaInputUI.Rd
man/buildEmptyPlotlyPlot.Rd
man/buildPlottingDF.Rd
man/calculatePCAs.Rd
man/computeCI_Interval.Rd
man/computeDistMat.Rd
man/corrAnalysis.Rd
man/corrAnalysisUI.Rd
man/corrFeature.Rd
man/corrInput.Rd
man/corrInputUI.Rd
man/corrPhenotype.Rd
man/createHeader.Rd
man/dataInput.Rd
man/dataInputUI.Rd
man/designPairs.Rd
man/diffAnalysis.Rd
man/diffAnalysisUI.Rd
man/diffInput.Rd
man/diffInputUI.Rd
man/diffTable.Rd
man/diffTableUI.Rd
man/extendPhenoData.Rd
man/featAbundance.Rd
man/featAbundanceUI.Rd
man/featureAnalysis.Rd
man/featureAnalysisUI.Rd
man/featureCorr.Rd
man/featureCorrUI.Rd
man/featureInput.Rd
man/featureInputUI.Rd
man/featureTable.Rd
man/featureTableUI.Rd
man/fileUpload.Rd
man/fileUploadUI.Rd
man/filterByPheno.Rd
man/filterMEData.Rd
man/generateReport.Rd
man/getFeatModCode.Rd
man/getFeatSplitCode.Rd
man/getFileType.Rd
man/getFilterChoices.Rd
man/getLegendLevel.Rd
man/getPhenoChanges.Rd
man/getPhenoModCode.Rd
man/getWidths.Rd
man/heatmapInput.Rd
man/heatmapInputUI.Rd
man/interAnalysis.Rd
man/interAnalysisUI.Rd
man/intraAnalysis.Rd
man/intraAnalysisUI.Rd
man/intraInput.Rd
man/intraInputUI.Rd
man/longAnalysis.Rd
man/longAnalysisUI.Rd
man/longInput.Rd
man/longInputUI.Rd
man/longResults.Rd
man/longResultsUI.Rd
man/makeQCPlot.Rd
man/normalizeData.Rd
man/parseInteractionName.Rd
man/phenotypeCorr.Rd
man/phenotypeCorrUI.Rd
man/phenotypeTable.Rd
man/phenotypeTableUI.Rd
man/plotAbundance.Rd
man/plotAlpha.Rd
man/plotAvgAbundance.Rd
man/plotBeta.Rd
man/plotHeatmap.Rd
man/plotLongFeature.Rd
man/plotSingleFeature.Rd
man/plotlyHistogram.Rd
man/plotlySampleBarplot.Rd
man/readData.Rd
man/relAbundance.Rd
man/relAbundanceUI.Rd
man/replaceWithUnknown.Rd
man/reportList.Rd
man/reportListUI.Rd
man/reportRow.Rd
man/reportRowUI.Rd
man/rollDownFeatures.Rd
man/runDiffTest.Rd
man/runMicrobiomeExplorer.Rd
tests/testthat.R
tests/testthat/test-agg_norm_functions.R
tests/testthat/test-correlation_functions.R
tests/testthat/test-differential_functions.R
tests/testthat/test-functions.R
tests/testthat/test-inter_functions.R
vignettes/exploreMouseData.Rmd
