filterMEData: Function to filter the MRexperiment data by numerical...
In zoecastillo/microbiomeExplorer: Microbiome Exploration App
filterMEData R Documentation
Function to filter the MRexperiment data by numerical parameters
Description
Function to filter the MRexperiment data by numerical parameters
Usage
filterMEData(MRobj, minpresence = 1, minfeats = 2, minreads = 2)
Arguments
MRobj
MRExperiment object to filter
minpresence
minimum sample presence per feature
minfeats
minimum number of features per sample
minreads
minimum number of reads per sample
Value
the filtered MRobj
Author(s)
Janina Reeder
Examples
data("mouseData", package = "metagenomeSeq")
filterMEData(MRobj = mouseData, minpresence = 4, minfeats = 300)
zoecastillo/microbiomeExplorer documentation built on Sept. 11, 2022, 7:40 a.m.
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| filterMEData | R Documentation |
Function to filter the MRexperiment data by numerical parameters
Description
Function to filter the MRexperiment data by numerical parameters
Usage
filterMEData(MRobj, minpresence = 1, minfeats = 2, minreads = 2)
Arguments
MRobj |
MRExperiment object to filter |
minpresence |
minimum sample presence per feature |
minfeats |
minimum number of features per sample |
minreads |
minimum number of reads per sample |
Value
the filtered MRobj
Author(s)
Janina Reeder
Examples
data("mouseData", package = "metagenomeSeq")
filterMEData(MRobj = mouseData, minpresence = 4, minfeats = 300)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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