count_table.partial: Example count table of GTEx RNA-seq experiment

In zshao1/ERSSA: Empirical RNA-seq Sample Size Analysis

Example count table of GTEx RNA-seq experiment

Description

Count table generated using data downloaded from Recount2 website that processed Raw GTEx dataset. Table has samples on columns and genes on rows. This is a partial count table containing 1000 genes and 4 replicates each from heart and muscle. Used for testing purposes and to shorten run time.

References

https://jhubiostatistics.shinyapps.io/recount/

Melé, Marta, Pedro G. Ferreira, Ferran Reverter, David S. DeLuca, Jean Monlong, Michael Sammeth, Taylor R. Young, et al. “The Human Transcriptome across Tissues and Individuals.” Science 348, no. 6235 (May 8, 2015): 660–65. https://doi.org/10.1126/science.aaa0355.

Collado-Torres, Leonardo, Abhinav Nellore, Kai Kammers, Shannon E. Ellis, Margaret A. Taub, Kasper D. Hansen, Andrew E. Jaffe, Ben Langmead, and Jeffrey T. Leek. “Reproducible RNA-Seq Analysis Using Recount2.” Nature Biotechnology 35, no. 4 (April 2017): 319–21. https://doi.org/10.1038/nbt.3838.

zshao1/ERSSA documentation built on July 19, 2023, 9:20 p.m.