jbplot_cpuefits: Plot of fitted CPUE indices

In jabbamodel/JABBA: Just Another Bayesian Biomass Assessment

Plot of fitted CPUE indices

Description

Plots observed and fitted cpue indices with expexted CIs (dark grey) and posterior predictive distribution (light grey)

Usage

jbplot_cpuefits(
  jabba,
  index = NULL,
  output.dir = getwd(),
  add = FALSE,
  as.png = FALSE,
  single.plots = add,
  width = NULL,
  height = NULL,
  plotCIs = TRUE,
  verbose = TRUE
)

Arguments

jabba	output list from fit_jabba
index	option to plot specific indices (numeric & in order)
output.dir	directory to save plots
add	if TRUE is surpresses par() within the plotting function
as.png	save as png file of TRUE
single.plots	if TRUE plot invidual fits else make multiplot
width	plot width
height	plot height
plotCIs	plots error bars on CPUE observations
verbose	silent option

jabbamodel/JABBA documentation built on Nov. 2, 2024, 12:50 p.m.