getSYMBOL: Functions to deal with Data Packages
In annotate: Annotation for microarrays
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
The functions documented here are intended to make it easier to map
from a set of manufacturers identifiers (such as you will get from the
chips etc) to other identifiers.
Usage
1
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3
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8
Arguments
x
The identifiers to be mapped (usually manufacturer)
data
The basename of the meta-data package to be used.
what
what a character string for the name of an
annotation element of an annotation data package
which
which a character string in the form of MF, BP,
CC, or ANY to indicated the GO categories of interest
load
A logical value indicating whether to attempt to load the
required annotation data package if it isn't already loaded.
Details
Users must supply the basename of the meta-data package that they
want to use to provide the mappings. The name of the meta-data
package is the same as the basename.
Appropriate translations are done. In some cases such as getEG
and getSYMBOL there will only be one match and a vector is
returned. In other cases such as getPMID and getGO there
may be multiple matches and a list is returned.
For getGOdesc x contains GO identifiers (not
manufacturer identifiers) and the output is a list of GOTerms objects,
if which specifies some subset of the ontologies (MF, BP or CC)
then only terms for that ontology are retained.
lookUp is a general function that can be used to look
up matches. All other translation functions use lookUp
A BioC annotation data package contains annotation data environments
whose names are package name (e. g. hgu95av2) + element name
(e. g. PMID). what must be one of the element names for the
given data package.
getUniqAnnItem keeps track of the annotation elements that have
one to one mappings.
Value
Either a vector or a list depending on whether multiple values per
input are possible.
Author(s)
R. Gentleman
See Also
Examples
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12
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15
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19
library("hgu95av2.db")
library("GO.db")
data(sample.ExpressionSet)
gN <- featureNames(sample.ExpressionSet)[100:105]
lookUp(gN, "hgu95av2", "SYMBOL")
# Same as lookUp for SYMBOL except the return is a vector
getSYMBOL(gN,"hgu95av2" )
gg <- getGO(gN, "hgu95av2")
lookUp(gg[[2]][[1]][["GOID"]], "GO", "TERM")
# Same as lookUp for TERM
getGOdesc(gg[[2]][[1]][["GOID"]], "ANY")
# For BP only
getGOdesc(gg[[2]][[1]][["GOID"]], "BP")
getEG(gN, "hgu95av2")
getPMID(gN, "hgu95av2")
Example output
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colMeans, colSums, colnames,
dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, lengths, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which, which.max, which.min
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Loading required package: XML
Loading required package: org.Hs.eg.db
$`31339_at`
[1] "PI15"
$`31340_at`
[1] "MMP20"
$`31341_at`
[1] "KCNC3"
$`31342_at`
[1] "GALNT2"
$`31343_at`
[1] "IL1RN"
$`31344_at`
[1] "IGLV6-57"
31339_at 31340_at 31341_at 31342_at 31343_at 31344_at
"PI15" "MMP20" "KCNC3" "GALNT2" "IL1RN" "IGLV6-57"
$`GO:0006508`
GOID: GO:0006508
Term: proteolysis
Ontology: BP
Definition: The hydrolysis of proteins into smaller polypeptides and/or
amino acids by cleavage of their peptide bonds.
Synonym: ATP-dependent proteolysis
Synonym: peptidolysis
$`GO:0006508`
GOID: GO:0006508
Term: proteolysis
Ontology: BP
Definition: The hydrolysis of proteins into smaller polypeptides and/or
amino acids by cleavage of their peptide bonds.
Synonym: ATP-dependent proteolysis
Synonym: peptidolysis
$`GO:0006508`
GOID: GO:0006508
Term: proteolysis
Ontology: BP
Definition: The hydrolysis of proteins into smaller polypeptides and/or
amino acids by cleavage of their peptide bonds.
Synonym: ATP-dependent proteolysis
Synonym: peptidolysis
31339_at 31340_at 31341_at 31342_at 31343_at 31344_at
"51050" "9313" "3748" "2590" "3557" "28778"
$`31339_at`
[1] "10362728" "12477932" "18029348" "18464913" "23533145" "8882727" "8889548"
[8] "9473672"
$`31340_at`
[1] "10419448" "10634581" "10922468" "10949161" "11706946" "15296943"
[7] "15744043" "17611094" "18434575" "18714142" "19834535" "19913121"
[13] "19966041" "20379614" "20484597" "20628086" "21144496" "21466263"
[19] "21504268" "22330321" "23241590" "23355523" "23535732" "23625376"
[25] "23953525" "25805840" "26124219" "26337002" "26558991" "8921407"
[31] "9398237"
$`31341_at`
[1] "10712820" "10820125" "15148151" "16382104" "16501573" "1740329"
[7] "18592334" "19953606" "20301317" "20301404" "21479265" "21543613"
[13] "21827913" "22289912" "23293936" "23734863" "23912307" "24116147"
[19] "25152487" "25756792" "25981959" "26849432" "26997484" "8111118"
[25] "8917565"
$`31342_at`
[1] "12438318" "12477932" "12506059" "12754287" "12925576" "14702039"
[7] "15489334" "16434399" "16710414" "18029348" "18193043" "18193044"
[13] "18562306" "18596051" "18987386" "19060906" "19148283" "19460755"
[19] "19487539" "19656773" "19913121" "19946888" "20158509" "20160193"
[25] "20167577" "20379614" "20430392" "20570916" "20571754" "20628086"
[31] "20679960" "20686565" "20864672" "21651894" "21699783" "21933382"
[37] "21990321" "22152306" "22399527" "22418572" "22916037" "22939629"
[43] "22952570" "22992780" "23117232" "23303382" "23376485" "23620142"
[49] "23894607" "23912186" "24097068" "24582885" "24711643" "24740207"
[55] "25084356" "25362349" "25416956" "25744272" "26186194" "26405973"
[61] "26493351" "26496610" "26637976" "26744084" "26817450" "28025493"
[67] "7592619" "8663203" "8889549" "9295285" "9312074" "9394011"
[73] "9442070" "9592121" "9852147"
$`31343_at`
[1] "10443688" "10512743" "10625660" "10673296" "10744718" "10786823"
[7] "10860666" "10948677" "10988299" "11023482" "11027520" "11033452"
[13] "11045853" "11093146" "11127488" "11138328" "11145836" "11171832"
[19] "11233912" "11247888" "11264025" "11278614" "11423389" "11448121"
[25] "11466363" "11531943" "11574262" "11600466" "11606494" "11606496"
[31] "11640949" "11641511" "11665981" "11686217" "11762793" "11770040"
[37] "11784248" "11793861" "11802774" "11803448" "11816697" "11840488"
[43] "11841485" "11841553" "11846196" "11858187" "11876744" "11876758"
[49] "11991722" "12044341" "12070246" "12082590" "12082592" "12095061"
[55] "12102486" "12105837" "12111633" "12114904" "12115161" "12115182"
[61] "12133467" "12136897" "12140751" "12160520" "12161036" "12161099"
[67] "12164325" "12165808" "12220547" "12239970" "12240899" "12355453"
[73] "12441323" "12445219" "12445604" "12452470" "12453918" "12454835"
[79] "12468823" "12472674" "12477932" "12483741" "12496176" "12519748"
[85] "12530098" "12547728" "12551827" "12568735" "12578333" "12593203"
[91] "12595908" "12609525" "12618859" "12624309" "12626603" "12645941"
[97] "12667023" "12667286" "12679428" "12686792" "12694213" "12714264"
[103] "12718576" "12722027" "12729191" "12730545" "12730860" "12746420"
[109] "12746914" "12764021" "12768436" "12775358" "12788304" "12794527"
[115] "12801479" "12820354" "12824054" "12828754" "12847695" "12854083"
[121] "12891537" "12901853" "12913327" "12919285" "12930389" "12938145"
[127] "12958619" "1385987" "1386337" "14504049" "14514232" "14521725"
[133] "14522096" "14533660" "14566095" "14568678" "14585879" "14586324"
[139] "14611908" "14632761" "14633943" "14634579" "14634582" "14644395"
[145] "14647192" "14652282" "14656692" "14657427" "14664464" "14669220"
[151] "14672899" "14673228" "14734209" "14735144" "14750640" "14753487"
[157] "14758530" "1479000" "14982742" "14984963" "14986816" "14997019"
[163] "15020290" "15030461" "15036245" "15036607" "15056081" "15077300"
[169] "15082121" "15127646" "15141093" "15144571" "15170937" "15171792"
[175] "15181037" "15184943" "15188516" "15190266" "15201366" "15205567"
[181] "15223609" "15231136" "15233701" "15235132" "15236174" "15241561"
[187] "15247172" "15250242" "15266130" "15270852" "15286433" "15292002"
[193] "15305821" "15318032" "15325407" "15338333" "15339690" "1534997"
[199] "15379752" "15457475" "15476179" "15485792" "15489334" "15507960"
[205] "15507961" "15512788" "15530901" "15535834" "15539764" "15540224"
[211] "15551344" "15562761" "15566952" "15570075" "15574426" "15579481"
[217] "15602586" "15610073" "15644653" "15670034" "15672946" "15679582"
[223] "15694997" "15704154" "15717635" "15723707" "15727567" "15730917"
[229] "15733644" "15766560" "15797878" "15800325" "15803022" "15830637"
[235] "15836820" "15851404" "15866604" "15878285" "15884119" "15885804"
[241] "15900570" "15923123" "15927855" "15931231" "15943888" "15954918"
[247] "15986200" "16019127" "16019233" "16025481" "16026159" "16043936"
[253] "16053468" "16078996" "16088107" "16096333" "16098232" "16100774"
[259] "16106254" "16109659" "16114018" "16115908" "16126303" "16128937"
[265] "16142351" "16159520" "16164697" "16172101" "16174285" "16183821"
[271] "16195370" "16200608" "16202742" "16217062" "16226351" "16244470"
[277] "16246569" "16263000" "16268484" "16284368" "16284379" "16301842"
[283] "16318998" "16319982" "16335952" "16344560" "16361275" "16361815"
[289] "16362796" "16369899" "16389181" "16403098" "16405550" "16409203"
[295] "16414081" "16423338" "16436009" "16454826" "16456536" "16510430"
[301] "16519819" "16538639" "16540751" "16549749" "16550552" "16553947"
[307] "16573560" "16579840" "16595248" "16596202" "16635219" "16635751"
[313] "16636119" "16637265" "16638698" "16698387" "16699452" "16741227"
[319] "16764597" "16766392" "16769128" "16777324" "16804398" "16815316"
[325] "16817913" "16820326" "16820919" "16824064" "16839849" "16842617"
[331] "16856121" "16873708" "16879054" "16885604" "16886894" "16900886"
[337] "16905295" "16906455" "16907768" "16911569" "16921503" "16937503"
[343] "16938461" "16980335" "16984283" "16985030" "17002905" "17005410"
[349] "17026469" "17034724" "17035400" "17068065" "17069782" "17074546"
[355] "17083033" "17096351" "17107994" "17113632" "17114844" "17115419"
[361] "17174563" "17176440" "17177339" "17182583" "17207379" "17222831"
[367] "17224277" "17235630" "17256873" "17257312" "17258699" "17286233"
[373] "17290743" "17292896" "17295877" "17309751" "17314118" "17324969"
[379] "17327408" "17332449" "17335371" "17348243" "17351514" "17359523"
[385] "17373677" "17380888" "17388919" "17391700" "17413037" "17443229"
[391] "17444587" "17444864" "17446060" "17448214" "17453104" "17454884"
[397] "17459217" "17482260" "17483707" "17532232" "17548705" "17572155"
[403] "17584583" "17592300" "17593860" "17596285" "17607501" "17607547"
[409] "17610660" "17611547" "17611673" "17618436" "17627763" "17640324"
[415] "17645476" "17656565" "17703412" "17716546" "17760842" "17846855"
[421] "17847930" "17867984" "17899305" "17900737" "17903994" "17907045"
[427] "17914732" "17926179" "17948066" "17959519" "17963170" "17964974"
[433] "17993728" "18008080" "18029348" "18038187" "18047563" "18052703"
[439] "18052726" "18063673" "18069935" "18086767" "18165865" "18180150"
[445] "18186699" "18239554" "18243027" "18271063" "1827201" "18272394"
[451] "18278133" "1828071" "18288276" "18288454" "1828896" "18299273"
[457] "1830582" "18321309" "18322311" "18329282" "18332090" "18333945"
[463] "18336824" "1834644" "18354254" "18361937" "18364273" "18385937"
[469] "18386294" "18389618" "18396210" "18416755" "18423886" "18451331"
[475] "18455629" "18464913" "18468936" "18471873" "18484169" "18484691"
[481] "18494930" "18496214" "18545091" "18551993" "18565646" "18572364"
[487] "18579366" "18581280" "18583979" "18589098" "18597398" "18624935"
[493] "18632425" "18633131" "18665932" "18666137" "18676680" "18688110"
[499] "18702109" "18703194" "18715339" "18723088" "18728809" "18754838"
[505] "18761558" "18763028" "18771989" "18773331" "18779738" "18782283"
[511] "18805892" "18807132" "18808736" "18810365" "18814951" "18815552"
[517] "18818748" "18821666" "18832862" "18838927" "18853133" "18926055"
[523] "18940468" "18942754" "18987561" "19004046" "19009622" "19012493"
[529] "19013788" "19019335" "19026124" "19026700" "19030199" "19031173"
[535] "19046297" "19053923" "19056867" "19058789" "19066720" "19073760"
[541] "19074885" "19076825" "19086955" "19102413" "19111743" "19117745"
[547] "19125864" "19127455" "19129082" "19132772" "19134476" "19135625"
[553] "19141860" "19142372" "19151976" "19170196" "19191798" "19203086"
[559] "19247692" "19258032" "19258923" "19267917" "19269948" "19272615"
[565] "19280228" "19290009" "19290417" "19295440" "19322919" "19332120"
[571] "19334424" "19336370" "19336475" "19338208" "19347053" "19375283"
[577] "19399323" "19408823" "19418669" "19419456" "19427781" "19431193"
[583] "19453261" "19470040" "19489682" "19494218" "19495883" "19497711"
[589] "19505916" "19505919" "19506726" "19527514" "19544559" "19544973"
[595] "19550417" "19573080" "19574724" "19594368" "19603010" "19607807"
[601] "19618316" "19625176" "19638314" "19643686" "19644155" "19664671"
[607] "19683555" "19684156" "19692168" "19701653" "19702713" "19706048"
[613] "19711225" "19729601" "19733643" "19733878" "19764937" "19773279"
[619] "19804405" "19811432" "19811433" "19811434" "19818512" "19820020"
[625] "19822419" "19822442" "19839644" "19844779" "19850242" "19860911"
[631] "19876593" "19889076" "19892918" "19900796" "19904560" "19909950"
[637] "19913121" "19925477" "19930406" "19934104" "19948975" "20002810"
[643] "20005085" "20012999" "20032313" "20034444" "20056442" "20070880"
[649] "20080142" "20087638" "20092400" "20113413" "20131253" "20140262"
[655] "20141484" "20169140" "20175886" "20178882" "20185814" "20188863"
[661] "20192980" "20193596" "20196868" "20200422" "20207250" "20213229"
[667] "20213597" "20237151" "20237496" "20301318" "20305143" "20334849"
[673] "20335539" "20347268" "20353565" "20364673" "20378664" "20379614"
[679] "20399384" "20400062" "20412719" "20427258" "20450372" "20452482"
[685] "20453000" "20463618" "20467172" "20472930" "20482626" "20484876"
[691] "20485444" "20486195" "20495422" "20503287" "20536609" "20538031"
[697] "20551628" "20564140" "20568250" "20581747" "20592454" "20595916"
[703] "20603050" "20621920" "20626741" "20628086" "20630038" "20631624"
[709] "20650788" "20654748" "20673868" "20709104" "20734064" "20800651"
[715] "20802378" "20837746" "20839488" "20863445" "20880168" "20880945"
[721] "20934174" "20940514" "20942594" "20975573" "21035110" "21037510"
[727] "21044950" "21048327" "21049406" "21054807" "21086908" "21111725"
[733] "21174170" "21182747" "21235388" "21241861" "21243433" "21248262"
[739] "21265111" "21278303" "21357189" "2137200" "2137201" "2139180"
[745] "21394384" "2143761" "21455057" "2147937" "21523343" "21558284"
[751] "21575667" "21591983" "21621860" "21655939" "21671260" "21768915"
[757] "21848462" "21968104" "21980458" "22027586" "22032624" "22035161"
[763] "22059992" "22127713" "22205395" "22267087" "22285242" "22286731"
[769] "22312160" "22322675" "22327782" "22370044" "22431772" "22455686"
[775] "22498095" "22537067" "22744645" "22753384" "22795294" "22829643"
[781] "22882323" "22882407" "22909148" "22939635" "22948742" "23009887"
[787] "23013217" "23014359" "23028694" "23049596" "23049925" "23053980"
[793] "23122308" "23168096" "23192617" "23195019" "23212299" "23251650"
[799] "23251661" "23308180" "23323013" "23363559" "23376485" "23388595"
[805] "23406623" "23449693" "23462747" "23472661" "23499887" "23554905"
[811] "23562526" "23577098" "23584371" "23592003" "23602199" "23602982"
[817] "23609451" "23633206" "23743874" "23749763" "23765978" "23800434"
[823] "23818854" "23849770" "23953530" "23954849" "23969696" "23991111"
[829] "23999825" "24014495" "24055697" "24162774" "24182552" "24233813"
[835] "24274595" "24322806" "24446526" "24446657" "24465880" "24490166"
[841] "24504887" "24534280" "24557417" "24563688" "24588341" "24592969"
[847] "24603878" "24611340" "24680088" "24706315" "24771848" "24819208"
[853] "24840811" "24850227" "24905619" "24918527" "24933945" "24952603"
[859] "24969107" "24998848" "25073651" "25080789" "25089931" "25124963"
[865] "25174605" "25201247" "25207923" "25223242" "25286391" "25292060"
[871] "25331947" "25422100" "25461401" "25466956" "25500257" "25530139"
[877] "25542762" "25616863" "25726324" "25738940" "25821855" "25826984"
[883] "26003199" "26046681" "26097611" "26101331" "26158606" "26186194"
[889] "26269955" "26279136" "26316104" "26330006" "26445016" "26449434"
[895] "26474296" "26487586" "26500244" "26502861" "26521731" "26555681"
[901] "26610735" "26612588" "26646252" "26654556" "26813462" "26861613"
[907] "26972847" "26994310" "27105431" "27116880" "27340011" "27717726"
[913] "7629520" "7867645" "8045306" "8175703" "8188271" "8432529"
[919] "8726668" "8852605" "8992991" "9062194" "9169134" "9185517"
[925] "9514884" "9597123" "9710237" "9933103"
$`31344_at`
[1] "118171" "11955599" "12477932" "1249422" "23376485" "3923440"
[7] "4089539" "6797401" "814163" "8951372" "9074928"
annotate documentation built on Nov. 8, 2020, 8:14 p.m.
R Package Documentation
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
The functions documented here are intended to make it easier to map from a set of manufacturers identifiers (such as you will get from the chips etc) to other identifiers.
Usage
1 2 3 4 5 6 7 8 |
Arguments
x |
The identifiers to be mapped (usually manufacturer) |
data |
The basename of the meta-data package to be used. |
what |
|
which |
|
load |
A logical value indicating whether to attempt to load the required annotation data package if it isn't already loaded. |
Details
Users must supply the basename of the meta-data package that they want to use to provide the mappings. The name of the meta-data package is the same as the basename.
Appropriate translations are done. In some cases such as getEG
and getSYMBOL there will only be one match and a vector is
returned. In other cases such as getPMID and getGO there
may be multiple matches and a list is returned.
For getGOdesc x contains GO identifiers (not
manufacturer identifiers) and the output is a list of GOTerms objects,
if which specifies some subset of the ontologies (MF, BP or CC)
then only terms for that ontology are retained.
lookUp is a general function that can be used to look
up matches. All other translation functions use lookUp
A BioC annotation data package contains annotation data environments
whose names are package name (e. g. hgu95av2) + element name
(e. g. PMID). what must be one of the element names for the
given data package.
getUniqAnnItem keeps track of the annotation elements that have
one to one mappings.
Value
Either a vector or a list depending on whether multiple values per input are possible.
Author(s)
R. Gentleman
See Also
Examples
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 | library("hgu95av2.db")
library("GO.db")
data(sample.ExpressionSet)
gN <- featureNames(sample.ExpressionSet)[100:105]
lookUp(gN, "hgu95av2", "SYMBOL")
# Same as lookUp for SYMBOL except the return is a vector
getSYMBOL(gN,"hgu95av2" )
gg <- getGO(gN, "hgu95av2")
lookUp(gg[[2]][[1]][["GOID"]], "GO", "TERM")
# Same as lookUp for TERM
getGOdesc(gg[[2]][[1]][["GOID"]], "ANY")
# For BP only
getGOdesc(gg[[2]][[1]][["GOID"]], "BP")
getEG(gN, "hgu95av2")
getPMID(gN, "hgu95av2")
|
Example output
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colMeans, colSums, colnames,
dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, lengths, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which, which.max, which.min
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Loading required package: XML
Loading required package: org.Hs.eg.db
$`31339_at`
[1] "PI15"
$`31340_at`
[1] "MMP20"
$`31341_at`
[1] "KCNC3"
$`31342_at`
[1] "GALNT2"
$`31343_at`
[1] "IL1RN"
$`31344_at`
[1] "IGLV6-57"
31339_at 31340_at 31341_at 31342_at 31343_at 31344_at
"PI15" "MMP20" "KCNC3" "GALNT2" "IL1RN" "IGLV6-57"
$`GO:0006508`
GOID: GO:0006508
Term: proteolysis
Ontology: BP
Definition: The hydrolysis of proteins into smaller polypeptides and/or
amino acids by cleavage of their peptide bonds.
Synonym: ATP-dependent proteolysis
Synonym: peptidolysis
$`GO:0006508`
GOID: GO:0006508
Term: proteolysis
Ontology: BP
Definition: The hydrolysis of proteins into smaller polypeptides and/or
amino acids by cleavage of their peptide bonds.
Synonym: ATP-dependent proteolysis
Synonym: peptidolysis
$`GO:0006508`
GOID: GO:0006508
Term: proteolysis
Ontology: BP
Definition: The hydrolysis of proteins into smaller polypeptides and/or
amino acids by cleavage of their peptide bonds.
Synonym: ATP-dependent proteolysis
Synonym: peptidolysis
31339_at 31340_at 31341_at 31342_at 31343_at 31344_at
"51050" "9313" "3748" "2590" "3557" "28778"
$`31339_at`
[1] "10362728" "12477932" "18029348" "18464913" "23533145" "8882727" "8889548"
[8] "9473672"
$`31340_at`
[1] "10419448" "10634581" "10922468" "10949161" "11706946" "15296943"
[7] "15744043" "17611094" "18434575" "18714142" "19834535" "19913121"
[13] "19966041" "20379614" "20484597" "20628086" "21144496" "21466263"
[19] "21504268" "22330321" "23241590" "23355523" "23535732" "23625376"
[25] "23953525" "25805840" "26124219" "26337002" "26558991" "8921407"
[31] "9398237"
$`31341_at`
[1] "10712820" "10820125" "15148151" "16382104" "16501573" "1740329"
[7] "18592334" "19953606" "20301317" "20301404" "21479265" "21543613"
[13] "21827913" "22289912" "23293936" "23734863" "23912307" "24116147"
[19] "25152487" "25756792" "25981959" "26849432" "26997484" "8111118"
[25] "8917565"
$`31342_at`
[1] "12438318" "12477932" "12506059" "12754287" "12925576" "14702039"
[7] "15489334" "16434399" "16710414" "18029348" "18193043" "18193044"
[13] "18562306" "18596051" "18987386" "19060906" "19148283" "19460755"
[19] "19487539" "19656773" "19913121" "19946888" "20158509" "20160193"
[25] "20167577" "20379614" "20430392" "20570916" "20571754" "20628086"
[31] "20679960" "20686565" "20864672" "21651894" "21699783" "21933382"
[37] "21990321" "22152306" "22399527" "22418572" "22916037" "22939629"
[43] "22952570" "22992780" "23117232" "23303382" "23376485" "23620142"
[49] "23894607" "23912186" "24097068" "24582885" "24711643" "24740207"
[55] "25084356" "25362349" "25416956" "25744272" "26186194" "26405973"
[61] "26493351" "26496610" "26637976" "26744084" "26817450" "28025493"
[67] "7592619" "8663203" "8889549" "9295285" "9312074" "9394011"
[73] "9442070" "9592121" "9852147"
$`31343_at`
[1] "10443688" "10512743" "10625660" "10673296" "10744718" "10786823"
[7] "10860666" "10948677" "10988299" "11023482" "11027520" "11033452"
[13] "11045853" "11093146" "11127488" "11138328" "11145836" "11171832"
[19] "11233912" "11247888" "11264025" "11278614" "11423389" "11448121"
[25] "11466363" "11531943" "11574262" "11600466" "11606494" "11606496"
[31] "11640949" "11641511" "11665981" "11686217" "11762793" "11770040"
[37] "11784248" "11793861" "11802774" "11803448" "11816697" "11840488"
[43] "11841485" "11841553" "11846196" "11858187" "11876744" "11876758"
[49] "11991722" "12044341" "12070246" "12082590" "12082592" "12095061"
[55] "12102486" "12105837" "12111633" "12114904" "12115161" "12115182"
[61] "12133467" "12136897" "12140751" "12160520" "12161036" "12161099"
[67] "12164325" "12165808" "12220547" "12239970" "12240899" "12355453"
[73] "12441323" "12445219" "12445604" "12452470" "12453918" "12454835"
[79] "12468823" "12472674" "12477932" "12483741" "12496176" "12519748"
[85] "12530098" "12547728" "12551827" "12568735" "12578333" "12593203"
[91] "12595908" "12609525" "12618859" "12624309" "12626603" "12645941"
[97] "12667023" "12667286" "12679428" "12686792" "12694213" "12714264"
[103] "12718576" "12722027" "12729191" "12730545" "12730860" "12746420"
[109] "12746914" "12764021" "12768436" "12775358" "12788304" "12794527"
[115] "12801479" "12820354" "12824054" "12828754" "12847695" "12854083"
[121] "12891537" "12901853" "12913327" "12919285" "12930389" "12938145"
[127] "12958619" "1385987" "1386337" "14504049" "14514232" "14521725"
[133] "14522096" "14533660" "14566095" "14568678" "14585879" "14586324"
[139] "14611908" "14632761" "14633943" "14634579" "14634582" "14644395"
[145] "14647192" "14652282" "14656692" "14657427" "14664464" "14669220"
[151] "14672899" "14673228" "14734209" "14735144" "14750640" "14753487"
[157] "14758530" "1479000" "14982742" "14984963" "14986816" "14997019"
[163] "15020290" "15030461" "15036245" "15036607" "15056081" "15077300"
[169] "15082121" "15127646" "15141093" "15144571" "15170937" "15171792"
[175] "15181037" "15184943" "15188516" "15190266" "15201366" "15205567"
[181] "15223609" "15231136" "15233701" "15235132" "15236174" "15241561"
[187] "15247172" "15250242" "15266130" "15270852" "15286433" "15292002"
[193] "15305821" "15318032" "15325407" "15338333" "15339690" "1534997"
[199] "15379752" "15457475" "15476179" "15485792" "15489334" "15507960"
[205] "15507961" "15512788" "15530901" "15535834" "15539764" "15540224"
[211] "15551344" "15562761" "15566952" "15570075" "15574426" "15579481"
[217] "15602586" "15610073" "15644653" "15670034" "15672946" "15679582"
[223] "15694997" "15704154" "15717635" "15723707" "15727567" "15730917"
[229] "15733644" "15766560" "15797878" "15800325" "15803022" "15830637"
[235] "15836820" "15851404" "15866604" "15878285" "15884119" "15885804"
[241] "15900570" "15923123" "15927855" "15931231" "15943888" "15954918"
[247] "15986200" "16019127" "16019233" "16025481" "16026159" "16043936"
[253] "16053468" "16078996" "16088107" "16096333" "16098232" "16100774"
[259] "16106254" "16109659" "16114018" "16115908" "16126303" "16128937"
[265] "16142351" "16159520" "16164697" "16172101" "16174285" "16183821"
[271] "16195370" "16200608" "16202742" "16217062" "16226351" "16244470"
[277] "16246569" "16263000" "16268484" "16284368" "16284379" "16301842"
[283] "16318998" "16319982" "16335952" "16344560" "16361275" "16361815"
[289] "16362796" "16369899" "16389181" "16403098" "16405550" "16409203"
[295] "16414081" "16423338" "16436009" "16454826" "16456536" "16510430"
[301] "16519819" "16538639" "16540751" "16549749" "16550552" "16553947"
[307] "16573560" "16579840" "16595248" "16596202" "16635219" "16635751"
[313] "16636119" "16637265" "16638698" "16698387" "16699452" "16741227"
[319] "16764597" "16766392" "16769128" "16777324" "16804398" "16815316"
[325] "16817913" "16820326" "16820919" "16824064" "16839849" "16842617"
[331] "16856121" "16873708" "16879054" "16885604" "16886894" "16900886"
[337] "16905295" "16906455" "16907768" "16911569" "16921503" "16937503"
[343] "16938461" "16980335" "16984283" "16985030" "17002905" "17005410"
[349] "17026469" "17034724" "17035400" "17068065" "17069782" "17074546"
[355] "17083033" "17096351" "17107994" "17113632" "17114844" "17115419"
[361] "17174563" "17176440" "17177339" "17182583" "17207379" "17222831"
[367] "17224277" "17235630" "17256873" "17257312" "17258699" "17286233"
[373] "17290743" "17292896" "17295877" "17309751" "17314118" "17324969"
[379] "17327408" "17332449" "17335371" "17348243" "17351514" "17359523"
[385] "17373677" "17380888" "17388919" "17391700" "17413037" "17443229"
[391] "17444587" "17444864" "17446060" "17448214" "17453104" "17454884"
[397] "17459217" "17482260" "17483707" "17532232" "17548705" "17572155"
[403] "17584583" "17592300" "17593860" "17596285" "17607501" "17607547"
[409] "17610660" "17611547" "17611673" "17618436" "17627763" "17640324"
[415] "17645476" "17656565" "17703412" "17716546" "17760842" "17846855"
[421] "17847930" "17867984" "17899305" "17900737" "17903994" "17907045"
[427] "17914732" "17926179" "17948066" "17959519" "17963170" "17964974"
[433] "17993728" "18008080" "18029348" "18038187" "18047563" "18052703"
[439] "18052726" "18063673" "18069935" "18086767" "18165865" "18180150"
[445] "18186699" "18239554" "18243027" "18271063" "1827201" "18272394"
[451] "18278133" "1828071" "18288276" "18288454" "1828896" "18299273"
[457] "1830582" "18321309" "18322311" "18329282" "18332090" "18333945"
[463] "18336824" "1834644" "18354254" "18361937" "18364273" "18385937"
[469] "18386294" "18389618" "18396210" "18416755" "18423886" "18451331"
[475] "18455629" "18464913" "18468936" "18471873" "18484169" "18484691"
[481] "18494930" "18496214" "18545091" "18551993" "18565646" "18572364"
[487] "18579366" "18581280" "18583979" "18589098" "18597398" "18624935"
[493] "18632425" "18633131" "18665932" "18666137" "18676680" "18688110"
[499] "18702109" "18703194" "18715339" "18723088" "18728809" "18754838"
[505] "18761558" "18763028" "18771989" "18773331" "18779738" "18782283"
[511] "18805892" "18807132" "18808736" "18810365" "18814951" "18815552"
[517] "18818748" "18821666" "18832862" "18838927" "18853133" "18926055"
[523] "18940468" "18942754" "18987561" "19004046" "19009622" "19012493"
[529] "19013788" "19019335" "19026124" "19026700" "19030199" "19031173"
[535] "19046297" "19053923" "19056867" "19058789" "19066720" "19073760"
[541] "19074885" "19076825" "19086955" "19102413" "19111743" "19117745"
[547] "19125864" "19127455" "19129082" "19132772" "19134476" "19135625"
[553] "19141860" "19142372" "19151976" "19170196" "19191798" "19203086"
[559] "19247692" "19258032" "19258923" "19267917" "19269948" "19272615"
[565] "19280228" "19290009" "19290417" "19295440" "19322919" "19332120"
[571] "19334424" "19336370" "19336475" "19338208" "19347053" "19375283"
[577] "19399323" "19408823" "19418669" "19419456" "19427781" "19431193"
[583] "19453261" "19470040" "19489682" "19494218" "19495883" "19497711"
[589] "19505916" "19505919" "19506726" "19527514" "19544559" "19544973"
[595] "19550417" "19573080" "19574724" "19594368" "19603010" "19607807"
[601] "19618316" "19625176" "19638314" "19643686" "19644155" "19664671"
[607] "19683555" "19684156" "19692168" "19701653" "19702713" "19706048"
[613] "19711225" "19729601" "19733643" "19733878" "19764937" "19773279"
[619] "19804405" "19811432" "19811433" "19811434" "19818512" "19820020"
[625] "19822419" "19822442" "19839644" "19844779" "19850242" "19860911"
[631] "19876593" "19889076" "19892918" "19900796" "19904560" "19909950"
[637] "19913121" "19925477" "19930406" "19934104" "19948975" "20002810"
[643] "20005085" "20012999" "20032313" "20034444" "20056442" "20070880"
[649] "20080142" "20087638" "20092400" "20113413" "20131253" "20140262"
[655] "20141484" "20169140" "20175886" "20178882" "20185814" "20188863"
[661] "20192980" "20193596" "20196868" "20200422" "20207250" "20213229"
[667] "20213597" "20237151" "20237496" "20301318" "20305143" "20334849"
[673] "20335539" "20347268" "20353565" "20364673" "20378664" "20379614"
[679] "20399384" "20400062" "20412719" "20427258" "20450372" "20452482"
[685] "20453000" "20463618" "20467172" "20472930" "20482626" "20484876"
[691] "20485444" "20486195" "20495422" "20503287" "20536609" "20538031"
[697] "20551628" "20564140" "20568250" "20581747" "20592454" "20595916"
[703] "20603050" "20621920" "20626741" "20628086" "20630038" "20631624"
[709] "20650788" "20654748" "20673868" "20709104" "20734064" "20800651"
[715] "20802378" "20837746" "20839488" "20863445" "20880168" "20880945"
[721] "20934174" "20940514" "20942594" "20975573" "21035110" "21037510"
[727] "21044950" "21048327" "21049406" "21054807" "21086908" "21111725"
[733] "21174170" "21182747" "21235388" "21241861" "21243433" "21248262"
[739] "21265111" "21278303" "21357189" "2137200" "2137201" "2139180"
[745] "21394384" "2143761" "21455057" "2147937" "21523343" "21558284"
[751] "21575667" "21591983" "21621860" "21655939" "21671260" "21768915"
[757] "21848462" "21968104" "21980458" "22027586" "22032624" "22035161"
[763] "22059992" "22127713" "22205395" "22267087" "22285242" "22286731"
[769] "22312160" "22322675" "22327782" "22370044" "22431772" "22455686"
[775] "22498095" "22537067" "22744645" "22753384" "22795294" "22829643"
[781] "22882323" "22882407" "22909148" "22939635" "22948742" "23009887"
[787] "23013217" "23014359" "23028694" "23049596" "23049925" "23053980"
[793] "23122308" "23168096" "23192617" "23195019" "23212299" "23251650"
[799] "23251661" "23308180" "23323013" "23363559" "23376485" "23388595"
[805] "23406623" "23449693" "23462747" "23472661" "23499887" "23554905"
[811] "23562526" "23577098" "23584371" "23592003" "23602199" "23602982"
[817] "23609451" "23633206" "23743874" "23749763" "23765978" "23800434"
[823] "23818854" "23849770" "23953530" "23954849" "23969696" "23991111"
[829] "23999825" "24014495" "24055697" "24162774" "24182552" "24233813"
[835] "24274595" "24322806" "24446526" "24446657" "24465880" "24490166"
[841] "24504887" "24534280" "24557417" "24563688" "24588341" "24592969"
[847] "24603878" "24611340" "24680088" "24706315" "24771848" "24819208"
[853] "24840811" "24850227" "24905619" "24918527" "24933945" "24952603"
[859] "24969107" "24998848" "25073651" "25080789" "25089931" "25124963"
[865] "25174605" "25201247" "25207923" "25223242" "25286391" "25292060"
[871] "25331947" "25422100" "25461401" "25466956" "25500257" "25530139"
[877] "25542762" "25616863" "25726324" "25738940" "25821855" "25826984"
[883] "26003199" "26046681" "26097611" "26101331" "26158606" "26186194"
[889] "26269955" "26279136" "26316104" "26330006" "26445016" "26449434"
[895] "26474296" "26487586" "26500244" "26502861" "26521731" "26555681"
[901] "26610735" "26612588" "26646252" "26654556" "26813462" "26861613"
[907] "26972847" "26994310" "27105431" "27116880" "27340011" "27717726"
[913] "7629520" "7867645" "8045306" "8175703" "8188271" "8432529"
[919] "8726668" "8852605" "8992991" "9062194" "9169134" "9185517"
[925] "9514884" "9597123" "9710237" "9933103"
$`31344_at`
[1] "118171" "11955599" "12477932" "1249422" "23376485" "3923440"
[7] "4089539" "6797401" "814163" "8951372" "9074928"
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