circos.link | R Documentation |
Draw links between points or/and intervals
circos.link(
sector.index1,
point1,
sector.index2,
point2,
rou = get_most_inside_radius(),
rou1 = rou,
rou2 = rou,
h = NULL,
h.ratio = 0.5,
w = 1,
h2 = h,
w2 = w,
inverse = FALSE,
col = "black",
lwd = par("lwd"),
lty = par("lty"),
border = col,
directional = 0,
arr.length = ifelse(arr.type == "big.arrow", 0.02, 0.4),
arr.width = arr.length/2,
arr.type = "triangle",
arr.lty = lty,
arr.lwd = lwd,
arr.col = col,
reduce_to_mid_line = FALSE)
sector.index1 |
Index for the first sector where one link end locates |
point1 |
A single value or a numeric vector of length 2. If it is a 2-elements vector, then the link would be a belt/ribbon. |
sector.index2 |
Index for the other sector where the other link end locates |
point2 |
A single value or a numeric vector of length 2. If it is a 2-elements vector, then the link would be a belt/ribbon. |
rou |
The position of the the link ends (if |
rou1 |
The position of end 1 of the link. |
rou2 |
The position of end 2 of the link. |
h |
Height of the link, measured as percent to the radius to the unit circle. By default it is automatically infered. |
h.ratio |
systematically change the link height. The value is between 0 and 1. |
w |
Since the link is a Bezier curve, it controls the shape of Bezier curve. |
h2 |
Height of the bottom edge of the link if it is a ribbon. |
w2 |
Shape of the bottom edge of the link if it is a ribbon. |
inverse |
Whether the link is inversed. |
col |
Color of the link. If the link is a ribbon, then it is the filled color for the ribbon. |
lwd |
Line (or border) width |
lty |
Line (or border) style |
border |
If the link is a ribbon, then it is the color for the ribbon border. |
directional |
0 for no direction, 1 for direction from |
arr.width |
Width of the arrows, pass to |
arr.type |
Type of the arrows, pass to |
arr.length |
Length of the arrows, measured in 'cm', pass to |
arr.col |
Color of the arrows, pass to |
arr.lwd |
Line width of arrows, pass to |
arr.lty |
Line type of arrows, pass to |
reduce_to_mid_line |
Only use the middle points of |
Links are implemented as quadratic Bezier curves (https://en.wikipedia.org/wiki/B%C3%A9zier_curve#Rational_B.C3.A9zier_curves ).
Drawing links does not create any track. So you can think it is independent of the tracks.
By default you only need to set sector.index1
, point1
, sector.index2
and point2
. The
links would look nice.
Please refer to the vignette for detailed explanation.
https://jokergoo.github.io/circlize_book/book/graphics.html#links
# There is no example
NULL
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.