qtl2dplotly: 2D QTL plotly

In gap: Genetic Analysis Package

2D QTL plotly

Description

2D QTL plotly

Usage

qtl2dplotly(
  d,
  chrlen = gap::hg19,
  qtl.id = "SNPid:",
  qtl.prefix = "QTL:",
  qtl.gene = "Gene:",
  target.type = "Protein",
  TSS = FALSE,
  xlab = "QTL position",
  ylab = "Gene position",
  ...
)

Arguments

d	Data in qtl2dplot() format.
chrlen	Lengths of chromosomes for specific build: hg18, hg19, hg38.
qtl.id	QTL id.
qtl.prefix	QTL prefix.
qtl.gene	QTL gene.
target.type	Type of target, e.g., protein.
TSS	to use TSS when TRUE.
xlab	X-axis title.
ylab	Y-axis title.
...	Additional arguments, e.g., target, log10p, to qtl2dplot.

Value

A plotly figure.

Examples

## Not run: 
INF <- Sys.getenv("INF")
d <- read.csv(file.path(INF,"work","INF1.merge.cis.vs.trans"),as.is=TRUE)
r <- qtl2dplotly(d)
htmlwidgets::saveWidget(r,file=file.path(INF,"INF1.qtl2dplotly.html"))
r

## End(Not run)

gap documentation built on Aug. 26, 2023, 5:07 p.m.