distanceMethodList: List of distance method keys supported in 'distance'
In phyloseq: Handling and analysis of high-throughput microbiome census data
Description
Usage
Format
See Also
Examples
Description
Distance methods should be specified by exact string match.
Cannot do partial matching for all options,
because too many similar options in downstream method dispatch.
Usage
1
Format
A list of character vectors.
Every entry specifies a supported distance method.
Names in the list indicate which downstream function
is being utilized for further details.
Same functions are linked in the itemized list below.
unifracUniFrac
wunifracUniFrac
dpcoaDPCoA
jsdJSD
manhattanvegdist
euclideanvegdist
canberravegdist
brayvegdist
kulczynskivegdist
jaccardvegdist
gowervegdist
altGowervegdist
morisitavegdist
hornvegdist
mountfordvegdist
raupvegdist
binomialvegdist
chaovegdist
caovegdist
wbetadiver
-betadiver
cbetadiver
wbbetadiver
rbetadiver
Ibetadiver
ebetadiver
tbetadiver
mebetadiver
jbetadiver
sorbetadiver
mbetadiver
-betadiver
cobetadiver
ccbetadiver
gbetadiver
-betadiver
lbetadiver
hkbetadiver
rlbbetadiver
simbetadiver
glbetadiver
zbetadiver
maximumdist
binarydist
minkowskidist
ANYdesigndist
See Also
Examples
1
phyloseq documentation built on Nov. 8, 2020, 6:41 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Format See Also Examples
Description
Distance methods should be specified by exact string match. Cannot do partial matching for all options, because too many similar options in downstream method dispatch.
Usage
1 |
Format
A list of character vectors. Every entry specifies a supported distance method. Names in the list indicate which downstream function is being utilized for further details. Same functions are linked in the itemized list below.
unifracUniFracwunifracUniFracdpcoaDPCoAjsdJSDmanhattanvegdisteuclideanvegdistcanberravegdistbrayvegdistkulczynskivegdistjaccardvegdistgowervegdistaltGowervegdistmorisitavegdisthornvegdistmountfordvegdistraupvegdistbinomialvegdistchaovegdistcaovegdistwbetadiver-betadivercbetadiverwbbetadiverrbetadiverIbetadiverebetadivertbetadivermebetadiverjbetadiversorbetadivermbetadiver-betadivercobetadiverccbetadivergbetadiver-betadiverlbetadiverhkbetadiverrlbbetadiversimbetadiverglbetadiverzbetadivermaximumdistbinarydistminkowskidistANYdesigndist
See Also
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.