read.fsa.bins: Estimate optimal binning from fsa files

Description Usage Arguments Value Author(s) See Also

View source: R/readfsa.R

Description

Estimate optimal binning from fsa files.

Usage

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  read.fsa.bins(files, path = "", dye, SizeStandard,
    Range = range(SizeStandard), binwidth = 1, SNR = 20,
    verbose = TRUE)

Arguments

files

A vector of filenames. Can be a relative or an absolute path.

path

The base path for the filenames. Defaults to the working directory.

dye

A vector with the names of the dyes used for the data.

SizeStandard

A numeric vector with basepairs of the size standard.

Range

A numeric vector of length 2 with the lower and upper limit of the desired markers (in number of base pairs).

binwidth

The desired width of the bins.

SNR

Maximum signal-to-noise ratio for peaks of the size standard. Used to ignore unwanted very strong peaks.

verbose

Print the name of each file when processing it. Useful for tracking progress.

Value

A names list with the breaks for each dye.

Author(s)

Thierry Onkelinx Thierry.Onkelinx@inbo.be, Paul Quataert

See Also

read.fsa


AFLP documentation built on May 2, 2019, 6:13 p.m.