Description Usage Arguments Value Author(s) See Also
Estimate optimal binning from fsa files.
1 2 3 | read.fsa.bins(files, path = "", dye, SizeStandard,
Range = range(SizeStandard), binwidth = 1, SNR = 20,
verbose = TRUE)
|
files |
A vector of filenames. Can be a relative or an absolute path. |
path |
The base path for the filenames. Defaults to the working directory. |
dye |
A vector with the names of the dyes used for the data. |
SizeStandard |
A numeric vector with basepairs of the size standard. |
Range |
A numeric vector of length 2 with the lower and upper limit of the desired markers (in number of base pairs). |
binwidth |
The desired width of the bins. |
SNR |
Maximum signal-to-noise ratio for peaks of the size standard. Used to ignore unwanted very strong peaks. |
verbose |
Print the name of each file when processing it. Useful for tracking progress. |
A names list with the breaks for each dye.
Thierry Onkelinx Thierry.Onkelinx@inbo.be, Paul Quataert
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