AFLP.outlier: Creates an AFLP outlier object

Description Usage Arguments Value Author(s) See Also Examples

View source: R/AFLP-outlier.R

Description

Creates an AFLP outlier object. The outlier object is used to mark observations as outliers in an AFLP object. These outliers will be omitted when normalising, classifying or calculating the repeatability.

Usage

1
  AFLP.outlier(Replicate, Specimen, Marker, Residual)

Arguments

Replicate

A data.frame with three columns: PC (primer combination), Replicate and Observed.

Specimen

A data.frame with three columns: PC (primer combination), Specimen and Observed.

Marker

A data.frame with three columns: PC (primer combination), Marker and Observed.

Residual

A data.frame with four columns: PC (primer combination), Replicate, Marker and Observed.

Value

An AFLP outlier object

Author(s)

Thierry Onkelinx Thierry.Onkelinx@inbo.be, Paul Quataert

See Also

AFLP.outlier-class, markers, replicates, residuals, specimens

Examples

1
2
3
4
5
6
7
8
AFLP.outlier()
AFLP.outlier(
 Replicate = data.frame(
   PC = "PC1",
   Replicate = c("C.09.1744", "C.09.1745"),
   Observed = numeric(2)
 )
)

AFLP documentation built on May 2, 2019, 6:13 p.m.