The BayesFactor package is a suite of functions for computing various Bayes factors for simple designs, including the one- and two-sample designs, one-way designs, general ANOVA designs, and linear regression.

Author | Richard D. Morey, Jeffrey N. Rouder |

Date of publication | 2013-04-12 08:32:19 |

Maintainer | Richard D. Morey <richarddmorey@gmail.com> |

License | GPL-2 |

Version | 0.9.4 |

http://bayesfactorpcl.r-forge.r-project.org/ |

**anovaBF:** Function to compute Bayes factors for ANOVA designs

**as.BFBayesFactor:** Function to coerce objects to the BFBayesFactor class

**BayesFactor-package:** Functions to compute Bayes factor hypothesis tests for common...

**BFBayesFactor-class:** General S4 class for representing multiple Bayes factor model...

**BFBayesFactorList-class:** General S4 class for representing a collection of Bayes...

**BFInfo:** Prints the version information for the BayesFactor package

**BFManual:** Opens the HTML manual for the BayesFactor package

**compare-methods:** Compare two models, with respect to some data

**extractBF-methods:** Extract the Bayes factor from an object

**generalTestBF:** Function to compute Bayes factors for general designs

**linearReg.R2stat:** Use R^2 statistic to compute Bayes factor for regression...

**lmBF:** Function to compute Bayes factors for specific linear models

**logMeanExpLogs:** Functions to compute the logarithm of the mean (and...

**model-classes:** General S4 classes for representing models for comparison

**nWayAOV:** Use ANOVA design matrix to compute Bayes factors or sample...

**oneWayAOV.Fstat:** Use F statistic to compute Bayes factor for balanced one-way...

**options-BayesFactor:** options() for package BayesFactor

**plot.BFBayesFactor:** Plot a Bayes factor object

**plot.BFBayesFactorTop:** Plot a Bayes factor top-down object

**posterior-methods:** Sample from the posterior distribution of one of several...

**puzzles:** Puzzle completion times from Hays (1994)

**recompute-methods:** Take an object and redo the computation (useful for sampling)

**regressionBF:** Function to compute Bayes factors for regression designs

**ttestBF:** Function for Bayesian analysis of one- and two-sample designs

**ttest.tstat:** Use t statistic to compute Bayes factor for one- and two-...

anovaBF | Man page |

as.BFBayesFactor | Man page |

BayesFactor | Man page |

BayesFactor-package | Man page |

/,BFBayesFactor,BFBayesFactor-method | Man page |

BFBayesFactor-class | Man page |

[,BFBayesFactor,index,missing,missing-method | Man page |

BFBayesFactorList-class | Man page |

[,BFBayesFactorList,index,index,missing-method | Man page |

[,BFBayesFactorList,index,missing,missing-method | Man page |

[,BFBayesFactorList,missing,index,missing-method | Man page |

BFBayesFactorTop-class | Man page |

[,BFBayesFactorTop,index,missing,missing-method | Man page |

BFindepSample-class | Man page |

BFInfo | Man page |

BFlinearModel-class | Man page |

BFManual | Man page |

BFmodel-class | Man page |

BFoneSample-class | Man page |

compare | Man page |

compare,BFindepSample,missing,data.frame-method | Man page |

compare,BFlinearModel,BFlinearModel,data.frame-method | Man page |

compare,BFlinearModel,missing,data.frame-method | Man page |

compare,BFmcmc,BFmcmc,ANY-method | Man page |

compare,BFmcmc,missing,ANY-method | Man page |

compare,BFoneSample,missing,data.frame-method | Man page |

extractBF | Man page |

extractBF,BFBayesFactor-method | Man page |

generalTestBF | Man page |

is.na,BFBayesFactor-method | Man page |

linearReg.R2stat | Man page |

lmBF | Man page |

logCumMeanExpLogs | Man page |

logMeanExpLogs | Man page |

/,numeric,BFBayesFactorList-method | Man page |

/,numeric,BFBayesFactor-method | Man page |

nWayAOV | Man page |

oneWayAOV.Fstat | Man page |

options-BayesFactor | Man page |

plot.BFBayesFactor | Man page |

plot.BFBayesFactorTop | Man page |

posterior | Man page |

posterior,BFBayesFactor,missing,missing,missing-method | Man page |

posterior,BFBayesFactor,missing,missing,numeric-method | Man page |

posterior,BFBayesFactor,numeric,missing,numeric-method | Man page |

posterior,BFindepSample,missing,data.frame,numeric-method | Man page |

posterior,BFlinearModel,missing,data.frame,missing-method | Man page |

posterior,BFlinearModel,missing,data.frame,numeric-method | Man page |

posterior,BFoneSample,missing,data.frame,numeric-method | Man page |

puzzles | Man page |

recompute | Man page |

recompute,BFBayesFactor-method | Man page |

recompute,BFmcmc-method | Man page |

regressionBF | Man page |

t,BFBayesFactorList-method | Man page |

t,BFBayesFactor-method | Man page |

ttestBF | Man page |

ttest.tstat | Man page |

which.max,BFBayesFactor-method | Man page |

which.min,BFBayesFactor-method | Man page |

BayesFactor/.Rinstignore

BayesFactor/DESCRIPTION

BayesFactor/NAMESPACE

BayesFactor/NEWS

BayesFactor/R

BayesFactor/R/BayesFactorPCL-package.R
BayesFactor/R/aaClasses.R
BayesFactor/R/aaGenerics.R
BayesFactor/R/anovaBF-utility.R
BayesFactor/R/anovaBF.R
BayesFactor/R/checking.R
BayesFactor/R/common.R
BayesFactor/R/debug.R
BayesFactor/R/gaussApproxAOV.R
BayesFactor/R/generalTest-utility.R
BayesFactor/R/generalTestBF.R
BayesFactor/R/linearReg_R2stat.R
BayesFactor/R/lmBF.R
BayesFactor/R/logMean.R
BayesFactor/R/manual.R
BayesFactor/R/methods-BFBayesFactor.R
BayesFactor/R/methods-BFBayesFactorList.R
BayesFactor/R/methods-BFBayesFactorTop.R
BayesFactor/R/methods-BFlinearModel-compare.R
BayesFactor/R/methods-BFmodel.R
BayesFactor/R/methods-BFmodelSample.R
BayesFactor/R/nWayAOV-utility.R
BayesFactor/R/nWayAOV.R
BayesFactor/R/onAttach.R
BayesFactor/R/oneWayAOV-utility.R
BayesFactor/R/oneWayAOV_Fstat.R
BayesFactor/R/plot-BFBayesFactor.R
BayesFactor/R/plot-BFBayesFactorTop.R
BayesFactor/R/regressionBF-utility.R
BayesFactor/R/regressionBF.R
BayesFactor/R/ttest-utility.R
BayesFactor/R/ttestBF.R
BayesFactor/R/ttest_tstat.R
BayesFactor/R/version.R
BayesFactor/data

BayesFactor/data/puzzles.rda

BayesFactor/inst

BayesFactor/inst/SVN_VERSION

BayesFactor/inst/doc

BayesFactor/inst/doc/BayesFactor-intro.R

BayesFactor/inst/doc/Makefile

BayesFactor/inst/doc/extra

BayesFactor/inst/doc/extra/logo.png

BayesFactor/inst/doc/extra/manual.css

BayesFactor/inst/doc/index.R

BayesFactor/inst/doc/index.Rmd

BayesFactor/inst/doc/index.html

BayesFactor/inst/doc/manual.R

BayesFactor/inst/doc/manual.Rmd

BayesFactor/inst/doc/manual.html

BayesFactor/inst/etc

BayesFactor/inst/etc/gibi.html

BayesFactor/inst/etc/gibi.txt

BayesFactor/inst/tests

BayesFactor/inst/tests/test-anovaBF.R

BayesFactor/man

BayesFactor/man/BFBayesFactor-class.Rd
BayesFactor/man/BFBayesFactorList-class.Rd
BayesFactor/man/BFInfo.Rd
BayesFactor/man/BFManual.Rd
BayesFactor/man/BayesFactor-package.Rd
BayesFactor/man/anovaBF.Rd
BayesFactor/man/as.BFBayesFactor.Rd
BayesFactor/man/compare-methods.Rd
BayesFactor/man/extractBF-methods.Rd
BayesFactor/man/generalTestBF.Rd
BayesFactor/man/linearReg.R2stat.Rd
BayesFactor/man/lmBF.Rd
BayesFactor/man/logMeanExpLogs.Rd
BayesFactor/man/model-classes.Rd
BayesFactor/man/nWayAOV.Rd
BayesFactor/man/oneWayAOV.Fstat.Rd
BayesFactor/man/options-BayesFactor.Rd
BayesFactor/man/plot.BFBayesFactor.Rd
BayesFactor/man/plot.BFBayesFactorTop.Rd
BayesFactor/man/posterior-methods.Rd
BayesFactor/man/puzzles.Rd
BayesFactor/man/recompute-methods.Rd
BayesFactor/man/regressionBF.Rd
BayesFactor/man/ttest.tstat.Rd
BayesFactor/man/ttestBF.Rd
BayesFactor/src

BayesFactor/src/BFPCL.h

BayesFactor/src/Makevars

BayesFactor/src/common.c

BayesFactor/src/debug.c

BayesFactor/src/linearReg.c

BayesFactor/src/logMean.c

BayesFactor/src/matrix.c

BayesFactor/src/nWayAOV.c

BayesFactor/src/oneWayAOV.c

BayesFactor/src/ttest.c

BayesFactor/tests

BayesFactor/tests/run-all.R

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