BayesFactor: Computation of Bayes factors for common designs

The BayesFactor package is a suite of functions for computing various Bayes factors for simple designs, including the one- and two-sample designs, one-way designs, general ANOVA designs, and linear regression.

AuthorRichard D. Morey, Jeffrey N. Rouder
Date of publication2013-04-12 08:32:19
MaintainerRichard D. Morey <richarddmorey@gmail.com>
LicenseGPL-2
Version0.9.4
http://bayesfactorpcl.r-forge.r-project.org/

View on R-Forge

Man pages

anovaBF: Function to compute Bayes factors for ANOVA designs

as.BFBayesFactor: Function to coerce objects to the BFBayesFactor class

BayesFactor-package: Functions to compute Bayes factor hypothesis tests for common...

BFBayesFactor-class: General S4 class for representing multiple Bayes factor model...

BFBayesFactorList-class: General S4 class for representing a collection of Bayes...

BFInfo: Prints the version information for the BayesFactor package

BFManual: Opens the HTML manual for the BayesFactor package

compare-methods: Compare two models, with respect to some data

extractBF-methods: Extract the Bayes factor from an object

generalTestBF: Function to compute Bayes factors for general designs

linearReg.R2stat: Use R^2 statistic to compute Bayes factor for regression...

lmBF: Function to compute Bayes factors for specific linear models

logMeanExpLogs: Functions to compute the logarithm of the mean (and...

model-classes: General S4 classes for representing models for comparison

nWayAOV: Use ANOVA design matrix to compute Bayes factors or sample...

oneWayAOV.Fstat: Use F statistic to compute Bayes factor for balanced one-way...

options-BayesFactor: options() for package BayesFactor

plot.BFBayesFactor: Plot a Bayes factor object

plot.BFBayesFactorTop: Plot a Bayes factor top-down object

posterior-methods: Sample from the posterior distribution of one of several...

puzzles: Puzzle completion times from Hays (1994)

recompute-methods: Take an object and redo the computation (useful for sampling)

regressionBF: Function to compute Bayes factors for regression designs

ttestBF: Function for Bayesian analysis of one- and two-sample designs

ttest.tstat: Use t statistic to compute Bayes factor for one- and two-...

Functions

anovaBF Man page
as.BFBayesFactor Man page
BayesFactor Man page
BayesFactor-package Man page
/,BFBayesFactor,BFBayesFactor-method Man page
BFBayesFactor-class Man page
[,BFBayesFactor,index,missing,missing-method Man page
BFBayesFactorList-class Man page
[,BFBayesFactorList,index,index,missing-method Man page
[,BFBayesFactorList,index,missing,missing-method Man page
[,BFBayesFactorList,missing,index,missing-method Man page
BFBayesFactorTop-class Man page
[,BFBayesFactorTop,index,missing,missing-method Man page
BFindepSample-class Man page
BFInfo Man page
BFlinearModel-class Man page
BFManual Man page
BFmodel-class Man page
BFoneSample-class Man page
compare Man page
compare,BFindepSample,missing,data.frame-method Man page
compare,BFlinearModel,BFlinearModel,data.frame-method Man page
compare,BFlinearModel,missing,data.frame-method Man page
compare,BFmcmc,BFmcmc,ANY-method Man page
compare,BFmcmc,missing,ANY-method Man page
compare,BFoneSample,missing,data.frame-method Man page
extractBF Man page
extractBF,BFBayesFactor-method Man page
generalTestBF Man page
is.na,BFBayesFactor-method Man page
linearReg.R2stat Man page
lmBF Man page
logCumMeanExpLogs Man page
logMeanExpLogs Man page
/,numeric,BFBayesFactorList-method Man page
/,numeric,BFBayesFactor-method Man page
nWayAOV Man page
oneWayAOV.Fstat Man page
options-BayesFactor Man page
plot.BFBayesFactor Man page
plot.BFBayesFactorTop Man page
posterior Man page
posterior,BFBayesFactor,missing,missing,missing-method Man page
posterior,BFBayesFactor,missing,missing,numeric-method Man page
posterior,BFBayesFactor,numeric,missing,numeric-method Man page
posterior,BFindepSample,missing,data.frame,numeric-method Man page
posterior,BFlinearModel,missing,data.frame,missing-method Man page
posterior,BFlinearModel,missing,data.frame,numeric-method Man page
posterior,BFoneSample,missing,data.frame,numeric-method Man page
puzzles Man page
recompute Man page
recompute,BFBayesFactor-method Man page
recompute,BFmcmc-method Man page
regressionBF Man page
t,BFBayesFactorList-method Man page
t,BFBayesFactor-method Man page
ttestBF Man page
ttest.tstat Man page
which.max,BFBayesFactor-method Man page
which.min,BFBayesFactor-method Man page

Files

.Rinstignore
DESCRIPTION
NAMESPACE
NEWS
R
R/BayesFactorPCL-package.R R/aaClasses.R R/aaGenerics.R R/anovaBF-utility.R R/anovaBF.R R/checking.R R/common.R R/debug.R R/gaussApproxAOV.R R/generalTest-utility.R R/generalTestBF.R R/linearReg_R2stat.R R/lmBF.R R/logMean.R R/manual.R R/methods-BFBayesFactor.R R/methods-BFBayesFactorList.R R/methods-BFBayesFactorTop.R R/methods-BFlinearModel-compare.R R/methods-BFmodel.R R/methods-BFmodelSample.R R/nWayAOV-utility.R R/nWayAOV.R R/onAttach.R R/oneWayAOV-utility.R R/oneWayAOV_Fstat.R R/plot-BFBayesFactor.R R/plot-BFBayesFactorTop.R R/regressionBF-utility.R R/regressionBF.R R/ttest-utility.R R/ttestBF.R R/ttest_tstat.R R/version.R
data
data/puzzles.rda
inst
inst/SVN_VERSION
inst/doc
inst/doc/BayesFactor-intro.R
inst/doc/Makefile
inst/doc/extra
inst/doc/extra/logo.png
inst/doc/extra/manual.css
inst/doc/index.R
inst/doc/index.Rmd
inst/doc/index.html
inst/doc/manual.R
inst/doc/manual.Rmd
inst/doc/manual.html
inst/etc
inst/etc/gibi.html
inst/etc/gibi.txt
inst/tests
inst/tests/test-anovaBF.R
man
man/BFBayesFactor-class.Rd man/BFBayesFactorList-class.Rd man/BFInfo.Rd man/BFManual.Rd man/BayesFactor-package.Rd man/anovaBF.Rd man/as.BFBayesFactor.Rd man/compare-methods.Rd man/extractBF-methods.Rd man/generalTestBF.Rd man/linearReg.R2stat.Rd man/lmBF.Rd man/logMeanExpLogs.Rd man/model-classes.Rd man/nWayAOV.Rd man/oneWayAOV.Fstat.Rd man/options-BayesFactor.Rd man/plot.BFBayesFactor.Rd man/plot.BFBayesFactorTop.Rd man/posterior-methods.Rd man/puzzles.Rd man/recompute-methods.Rd man/regressionBF.Rd man/ttest.tstat.Rd man/ttestBF.Rd
src
src/BFPCL.h
src/Makevars
src/common.c
src/debug.c
src/linearReg.c
src/logMean.c
src/matrix.c
src/nWayAOV.c
src/oneWayAOV.c
src/ttest.c
tests
tests/run-all.R

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