The BFBayesFactor
class is a general S4 class for
representing models model comparison via Bayes factor.
BFBayesFactor
objects can be inverted by taking
the reciprocal and can be divided by one another,
provided both objects have the same denominator. In
addition, the t
(transpose) method can be used to
invert Bayes factor objects.
The
BFBayesFactor
class has the following slots
defined:
a list of models all inheriting
BFmodel
, each providing a single denominator
a single BFmodel
object serving
as the denominator for all model comparisons
a data frame containing information about the comparison between each numerator and the denominator
a data frame containing the data used for the comparison
character string giving the version and revision number of the package that the model was created in
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | ## Compute some Bayes factors to demonstrate division and indexing
data(puzzles)
bfs <- anovaBF(RT ~ shape*color + ID, data = puzzles, whichRandom = "ID", progress=FALSE)
## First and second models can be separated; they remain BFBayesFactor objects
b1 = bfs[1]
b2 = bfs[2]
b1
## We can invert them, or divide them to obtain new model comparisons
1/b1
b1 / b2
## Use transpose to create a BFBayesFactorList
t(bfs)
|
Loading required package: coda
Loading required package: Matrix
************
Welcome to BayesFactor 0.9.12-4.2. If you have questions, please contact Richard Morey (richarddmorey@gmail.com).
Type BFManual() to open the manual.
************
Bayes factor analysis
--------------
[1] shape + ID : 2.853267 <U+00B1>1.72%
Against denominator:
RT ~ ID
---
Bayes factor type: BFlinearModel, JZS
Bayes factor analysis
--------------
[1] ID : 0.3504755 <U+00B1>1.72%
Against denominator:
RT ~ shape + ID
---
Bayes factor type: BFlinearModel, JZS
Bayes factor analysis
--------------
[1] shape + ID : 1.012727 <U+00B1>1.99%
Against denominator:
RT ~ color + ID
---
Bayes factor type: BFlinearModel, JZS
denominator
numerator shape + ID color + ID shape + color + ID
ID 0.3504755 0.3549359 0.08450643
denominator
numerator shape + color + shape:color + ID
ID 0.2342931
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