Files in RPPanalyzer
Reads, Annotates, and Normalizes Reverse Phase Protein Array Data

DESCRIPTION
NAMESPACE
inst/doc/RPPanalyzer.rnw
inst/doc/RPPanalyzer.R inst/doc/RPPanalyzer.pdf
inst/extdata/Slide1.gpr
inst/extdata/sampledescription.txt
inst/extdata/S1.gpr
inst/extdata/slidedescription.txt
inst/extdata/S2.gpr
inst/extdata/Slide2.gpr
inst/extdata/S4.gpr
inst/extdata/FCF_Slide.gpr
inst/extdata/Slide3.gpr
vignettes/Figure1.jpg
vignettes/workflow_RPPanalyzer.gif
vignettes/b2-clj4700dn-p2
vignettes/RPPanalyzer.rnw
vignettes/papers_RPPanalyzer.bib
R/select.measurements.R R/normalizeRPPA.R R/read.sampledescription.R R/rppaList2Heatmap.R R/averageData.R R/Sips.R R/test.correlation.R R/write.Data.R R/select.sample.group.R R/dil.ser.id.R R/calcLinear.R R/norm.static.II.R R/plotHeatmap.R R/plotMeasurementsQC.R R/rppaList2ExpressionSet.R R/correctDilinterc.R R/sub.ID.R R/dataPreproc.R R/array.id.R R/curveFitLinear.R R/curvePredictSigmoid.R R/median.raw.R R/pick.high.conc.R R/read.gpr.R R/remove.arrays.R R/plotTimeCourseII.R R/plotQC.R R/read.Data.R R/curveFitSigmoid.R R/plotqq.R R/samples.id.R R/norm.texas.R R/read.slidedescription.R R/annotate.arrays.R R/calcSdc.R R/createColumnIndices.R R/norm.static.I.R R/getErrorModel.R R/create.ID.col.R R/calcLogistic.R R/sample.median.R R/plotTimeCourse.R R/g.link.R R/get.Splines.R R/slides.id.R R/norm.BCA.R R/annotate.samples.R R/curvePredictLinear.R R/plotDilutionSeries.R R/logList.R R/simpleBoxplot.R R/spotbyspot.R R/heatmapcolors.R R/rppa2boxplot.R R/protein.con.R R/correctBG.R
data/slidedescription.old.txt.gz
data/HKdata.RData
data/ser.dil.samples.RData
data/sampledescription.old.txt.gz
data/dataI.RData
data/dataII.RData
data/dataIII.RData
man/remove.arrays.Rd man/rppa2boxplot.Rd man/normalizeRPPA.Rd man/getErrorModel.Rd man/slidedescription.txt.Rd man/correctDilinterc.Rd man/ser.dil.samples.Rd man/calcSdc.Rd man/dataPreproc.Rd man/test.correlation.Rd man/averageData.Rd man/read.Data.Rd man/select.measurements.Rd man/sampledescription.old.Rd man/rppanalyzer-package.Rd man/rppaList2ExpressionSet.Rd man/correctBG.Rd man/plotQC.Rd man/select.sample.group.Rd man/sample.median.Rd man/plotTimeCourse.Rd man/plotqq.Rd man/curvePredictSigmoid.Rd man/dataIII.Rd man/pick.high.conc.Rd man/calcLinear.Rd man/sampledescription.txt.Rd man/rppaList2Heatmap.Rd man/S1.gpr.Rd man/plotMeasurementsQC.Rd man/slidedescription.old.Rd man/simpleBoxplot.Rd man/calcLogistic.Rd man/logList.Rd man/dataI.Rd man/write.Data.Rd man/HKdata.Rd man/dataII.Rd man/plotTimeCourseII.Rd
build/vignette.rds
RPPanalyzer documentation built on Dec. 17, 2017, 3:02 p.m.