plotQC: Plot target and blank signal from RPPA control samples

In RPPanalyzer: Reads, Annotates, and Normalizes Reverse Phase Protein Array Data

Description

Plots target and blank signal from control samples of an RPPA data set in one plot. Exports pdf file.

Usage

plotQC(x, file = "target_vs_blank.pdf", arrays2rm = c("protein"))

Arguments

x	RPPA data list as output from read.Data
file	name of the PDF file
arrays2rm	character describing the arrays that dont have be plotted

Details

This function genrates scatter plots in a pdf file from not yet normalized, serially diluted control samples (annotated as control in the sample_type column of the sampledescription file) of RPPA data to get an impression of the antibody dynamic. An array with blank as target description is needed.

Value

generates a PDF file

Author(s)

Heiko Mannsperger <[e-mail]>

Examples

library(RPPanalyzer)
data(dataIII)

plotQC(dataIII,file="plotQC.pdf")

RPPanalyzer documentation built on May 2, 2019, 6:10 p.m.