plotMeasurementsQC: Scatter Plots from an RPPA data

In RPPanalyzer: Reads, Annotates, and Normalizes Reverse Phase Protein Array Data

Description

Plots the blank signals and the target specific signals of an RPPA data list in a PDF file.

Usage

   plotMeasurementsQC(x, file = "QC_plots.pdf", arrays2rm = c("protein"))

Arguments

x	RPPA data list as output from read.Data
file	name of the PDF file that will be exported
arrays2rm	character describing the arrays that dont have be plotted

Details

This function genrates scatter plots in a pdf file from not yet normalized samples (annotated as measurement in the sample_type column of the sampledescription file) of RPPA data to get an impression of the distance from the blank signal to the target specific signal. An array with blank as target description is needed.

Value

Genrates a PDF file

Author(s)

Heiko Mannsperger <[e-mail]>

Examples

	library(RPPanalyzer)
	data(dataIII)
   plotMeasurementsQC(dataIII,file="control_plot.pdf")

RPPanalyzer documentation built on May 2, 2019, 6:10 p.m.