Man pages for RTCGAToolbox
A new tool for exporting TCGA Firehose data
| CorResult-class | Class '"CorResult"' |
| DGEResult-class | Class '"DGEResult"' |
| FirehoseCGHArray-class | Class '"FirehoseCGHArray"' |
| FirehoseData-class | Class '"FirehoseData"' |
| FirehoseGISTIC-class | Class '"FirehoseGISTIC"' |
| FirehoseMethylationArray-class | Class '"FirehoseMethylationArray"' |
| FirehosemRNAArray-class | Class '"FirehosemRNAArray"' |
| getCNGECorrelation | Correlation between copy number data and gene expression... |
| getDiffExpressedGenes | Get differentially expressed genes between tumor and normal... |
| getFirehoseAnalyzeDates | Firehose data analyze run dates |
| getFirehoseData | Firehose project data client |
| getFirehoseDatasets | Get valid dataset alias. |
| getFirehoseRunningDates | Get valid analysis dates. |
| getMutationRate | Calculates the mutation ratio among the samples. |
| getReport | Make report plot. |
| getSurvival | Survival analysis based on gene expression value. |
| hg19.ucsc.gene.locations | hg19 known gene symbol and locations |
| RTCGASample | Sample TCGA Firehose data from BRCA dataset. |
| RTCGAToolbox-package | RTCGAToolbox: A data client and basic analysis toolbox for... |
