FirehoseGISTIC-class: Class '"FirehoseGISTIC"'

In RTCGAToolbox: A new tool for exporting TCGA Firehose data

Description

This class stores the copy number estimation from GISTIC2 algorithm.

Objects from the Class

Objects can be created by calls of the form new("FirehoseGISTIC", ...).

Slots

Dataset:

Object of class "character": Dataset name

AllByGene:

Object of class "data.frame": Gene level copy number estimation. 0 accepted as normal copy number. Negative values indicate deletions, positive values indicate amplifications.

ThresholedByGene:

Object of class "data.frame": Thresholed copy number estimations.-2: possibly homozygous deletion, -1: possibly heterozygous deletion, 0: diploid, 1: gain, 2: high amplification

Methods

No methods defined with class "FirehoseGISTIC" in the signature.

Author(s)

Mehmet Kemal Samur

Examples

showClass("FirehoseGISTIC")

RTCGAToolbox documentation built on May 2, 2019, 5:16 p.m.