This function inherit differential gene expression analysis from "limma" package. The function creates 2 groups (normal and tumor) based on TCGA barcodes and calculate differential gene expression between groups. Finally it returns "DGEResult" object list.
: "FirehoseData" object that includes raw gene count from RNAseq platform or normalized expression values from array platfroms.
: if set as "TRUE", function will draw heatmap, volcano plot and model plot from "voom" function.
This function returns a list where each item will be "DGEResult" object for one comparison.
Mehmet Kemal Samur
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