getMutationRate: Calculates the mutation ratio among the samples.
In RTCGAToolbox: A new tool for exporting TCGA Firehose data
Description
Usage
Arguments
Value
Author(s)
Examples
Description
This function calculates the gene mutation frequency among the samples. The function takes a "FirehoseData" object as an input parameters and calculates the mutation rate by using the 'Mutation' field of the object.
Usage
1
getMutationRate(dataObject)
Arguments
dataObject
: Must be "FirehoseData" object.
Value
Returns a data frame where first column will be gene symbols and second column will be mutation ratio.
Author(s)
Mehmet Kemal Samur
Examples
1
2
data(RTCGASample)
mutRate = getMutationRate(dataObject=a2)
RTCGAToolbox documentation built on May 2, 2019, 5:16 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) Examples
Description
This function calculates the gene mutation frequency among the samples. The function takes a "FirehoseData" object as an input parameters and calculates the mutation rate by using the 'Mutation' field of the object.
Usage
1 | getMutationRate(dataObject)
|
Arguments
dataObject |
: Must be "FirehoseData" object. |
Value
Returns a data frame where first column will be gene symbols and second column will be mutation ratio.
Author(s)
Mehmet Kemal Samur
Examples
1 2 | data(RTCGASample)
mutRate = getMutationRate(dataObject=a2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.