plotCampaignConcSeries: plotCampaignConcSeries

In RespChamberProc: Processing Data from Respiration Chambers

Description

get a series of ggplots of the time series and its fits

Usage

plotCampaignConcSeries(ds, dsFits = NULL, varName = "CO2_dry", 
    colChunk = "iChunk", timeCol = "TIMESTAMP", qualityFlag = 0, 
    fTextBR = NULL, fTextTL = NULL, fTextTR = NULL, 
    plotsPerPage = 64, fileName = "", colIds = c(), 
    ggplotList = c(), ylabel = paste0(varName, " (", 
        yunit, ")"), yunit = "", isVerbose = TRUE)

Arguments

ds	data frame to plot, with collumns idCol, timeCol and varName
dsFits	tibble of results of calcClosedChamberFlux with columns <colChunk>, flux, sdFlux, model,
varName	variable to plot
colChunk	column name of identifier of one time series
timeCol	column name of the time collumn
qualityFlag	vector of length unique(ds[[colChunk]]): quality flag. For chunks where this flag is not 0, subplots are dimmed.
fTextBR	function(resFit) to add some text to the bottom right of the plot, by default the rSquared from fitting object
fTextTL	function(resFit) to add some text to the top left of the plot, by default the autocorrelation from fitting object
fTextTR	function(resFit) to add a second text to the top right of the plot, by default the provided quality flag, where it is not zero
plotsPerPage	number of plots per page
fileName	if non-zero length string, the fileName where all plots are printed to #paste0(varName,".pdf")
colIds
ggplotList	list added to each ggplot.
ylabel	y-label, may provide a string of the unit
yunit	scalar string, part of default y label
isVerbose

Value

a tibble with columns page and plot, the second column holding plotting objects dsPlots %>% rowwise() %>% do({print(.$plot)})

Author(s)

Thomas Wutzler, Oscar Perez Priego

RespChamberProc documentation built on May 2, 2019, 5:53 p.m.