Files in SNPRelate
Parallel Computing Toolset for Genome-Wide Association Studies (GWAS)
NEWS
DESCRIPTION
NAMESPACE
inst/CITATION
inst/unitTests/runit.IBS.r
inst/unitTests/runit.PLINK.r
inst/unitTests/runTests.R
inst/unitTests/runit.PCA.r
inst/unitTests/valid/Validate.PCA.RData
inst/unitTests/valid/Validate.IBS.RData
inst/unitTests/valid/Validate.MoM.RData
inst/doc/SNPRelateTutorial.Rnw
inst/doc/SNPRelateTutorial.pdf
inst/doc/SNPRelateTutorial.R
inst/extdata/hapmap_geno.gds
inst/extdata/plinkhapmap.bed
inst/extdata/plinkhapmap.bim
inst/extdata/plinkhapmap.fam
inst/extdata/sequence.vcf
vignettes/SNPRelate-Flowchart.png
vignettes/SNPRelateTutorial.Rnw
vignettes/SNPRelateTutorial-IBDMLE.png
R/LD.r
R/SNPRelate_Main.r
R/PCA.r
R/IBD.r
R/IBS.r
src/dGWASMath.h
src/genPCA.cpp
src/CoreDEF.h
src/Makevars.win
src/genLD.cpp
src/SNPRelate.cpp
src/dVect.cpp
src/CoreGDSLink.h
src/dType.h
src/dGenGWAS.cpp
src/dVect.h
src/Makevars
src/genIBS.cpp
src/genIBD.cpp
src/dGenGWAS.h
src/CoreGDSLink.cpp
man/snpgdsIndInb.Rd
man/snpgdsIBS.Rd
man/snpgdsIBSNum.Rd
man/snpgdsSNPList.Rd
man/snpgdsBED2GDS.Rd
man/snpgdsPCASNPLoading.Rd
man/snpgdsPairIBD.Rd
man/snpgdsSummary.Rd
man/snpgdsErrMsg.Rd
man/snpgdsOption.Rd
man/snpgdsIBDMoM.Rd
man/snpgdsCombineGeno.Rd
man/snpgdsIBDMLE.Rd
man/SNPRelate-package.Rd
man/snpgdsSNPRateFreq.Rd
man/snpgdsLDpruning.Rd
man/snpgdsGDS2Eigen.Rd
man/snpgdsPCA.Rd
man/snpgdsPairIBDMLELogLik.Rd
man/snpgdsSNPListIntersect.Rd
man/snpgdsCreateGeno.Rd
man/hapmap_geno.Rd
man/snpgdsSNPListClass.Rd
man/snpgdsSelectSNP.Rd
man/snpgdsLDpair.Rd
man/snpgdsCreateGenoSet.Rd
man/snpgdsDiss.Rd
man/snpgdsIndInbCoef.Rd
man/snpgdsPCASampLoading.Rd
man/snpgdsGetGeno.Rd
man/snpgdsVCF2GDS.Rd
man/snpgdsGDS2BED.Rd
man/snpgdsSampMissrate.Rd
man/snpgdsLDMat.Rd
man/snpgdsCutTree.Rd
man/snpgdsIBDKING.Rd
man/snpgdsSNPListStrand.Rd
man/snpgdsExampleFileName.Rd
man/snpgdsGDS2PED.Rd
man/snpgdsDrawTree.Rd
man/snpgdsPCACorr.Rd
man/snpgdsHCluster.Rd
man/snpgdsIBDMLELogLik.Rd
man/snpgdsIBDSelection.Rd
build/vignette.rds
tests/runTests.R
data/hapmap_geno.RData
